View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_39 (Length: 224)
Name: NF5343_low_39
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 52446231 - 52446044
Alignment:
| Q |
18 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
117 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52446231 |
cacaaagcaatacaacacaaacacaaagtgaatccgaaagaacgaaacaacgtcacatacacatgcactgcgactatgaatcatcaatgataaaatgaaa |
52446132 |
T |
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| Q |
118 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaat |
205 |
Q |
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| T |
52446131 |
caatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaat |
52446044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 52447167 - 52446984
Alignment:
| Q |
18 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
117 |
Q |
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|||| ||||||||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| || ||||| |||||||||||||||||||||||||| |
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| T |
52447167 |
cacaaagcaatacaacacaagcacaaagtgaatctgaaagaacaaaacaacgtaacaaacacatacattgcgattatgaatcatcaataataaaatgaaa |
52447068 |
T |
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| Q |
118 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaat |
205 |
Q |
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||||||| | |||||||||| | |||| | |||| | ||||||||||| |||||||| |||||| |||||||| ||| ||||||| |
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| T |
52447067 |
caatctaca---aacaaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaat |
52446984 |
T |
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