View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5343_low_6 (Length: 539)

Name: NF5343_low_6
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5343_low_6
NF5343_low_6
[»] chr4 (36 HSPs)
chr4 (1-521)||(7876929-7877449)
chr4 (1-392)||(7774178-7774575)
chr4 (13-151)||(7904611-7904749)
chr4 (17-154)||(7907901-7908038)
chr4 (17-151)||(7770983-7771117)
chr4 (17-151)||(7789668-7789802)
chr4 (19-144)||(45372424-45372549)
chr4 (11-151)||(7822548-7822688)
chr4 (17-149)||(45366583-45366718)
chr4 (17-144)||(48862827-48862957)
chr4 (11-149)||(7800218-7800356)
chr4 (11-149)||(7813061-7813199)
chr4 (17-143)||(49041503-49041629)
chr4 (18-151)||(7238086-7238219)
chr4 (17-113)||(7786060-7786156)
chr4 (19-139)||(48156794-48156914)
chr4 (17-149)||(48890990-48891122)
chr4 (14-108)||(48870164-48870258)
chr4 (14-108)||(48885850-48885944)
chr4 (19-151)||(33134190-33134325)
chr4 (17-113)||(7765238-7765334)
chr4 (22-153)||(49044599-49044730)
chr4 (49-151)||(33133616-33133718)
chr4 (45-154)||(48902526-48902635)
chr4 (13-102)||(48875474-48875563)
chr4 (30-150)||(49048977-49049095)
chr4 (17-105)||(37827359-37827447)
chr4 (22-113)||(48735682-48735776)
chr4 (17-113)||(50668660-50668756)
chr4 (184-219)||(7907830-7907865)
chr4 (9-151)||(47207513-47207655)
chr4 (23-140)||(45385158-45385275)
chr4 (13-105)||(48148043-48148138)
chr4 (19-107)||(48170953-48171044)
chr4 (10-66)||(50251166-50251222)
chr4 (17-105)||(48898347-48898438)
[»] chr8 (6 HSPs)
chr8 (25-150)||(12194881-12195006)
chr8 (25-150)||(12439309-12439434)
chr8 (19-113)||(15348479-15348573)
chr8 (29-151)||(12199886-12200008)
chr8 (29-151)||(12444314-12444436)
chr8 (19-104)||(4032283-4032368)
[»] chr1 (5 HSPs)
chr1 (17-108)||(24309799-24309890)
chr1 (21-113)||(24322079-24322171)
chr1 (456-521)||(17782561-17782626)
chr1 (19-150)||(24339994-24340125)
chr1 (20-150)||(24415417-24415546)
[»] chr5 (6 HSPs)
chr5 (17-108)||(29712834-29712925)
chr5 (10-102)||(29695780-29695872)
chr5 (17-105)||(1812050-1812138)
chr5 (13-144)||(178605-178739)
chr5 (49-108)||(42562728-42562787)
chr5 (17-105)||(29687676-29687764)
[»] chr3 (4 HSPs)
chr3 (17-144)||(11024902-11025029)
chr3 (44-151)||(47452299-47452406)
chr3 (17-151)||(11015890-11016024)
chr3 (22-151)||(11006332-11006461)
[»] scaffold0508 (1 HSPs)
scaffold0508 (17-102)||(11890-11975)
[»] chr6 (2 HSPs)
chr6 (22-151)||(21015355-21015484)
chr6 (22-151)||(21980014-21980143)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 7877449 - 7876929
Alignment:
Q  1 gtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7877449 gtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagac 7877350  T
Q  101 ttcaccggcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgnnnnnnnnnnnnnnnnnnccgtgcactctaccatcttgtaaa 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                  || |||||||||||||||||||||    
T  7877349 ttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgtcttcttcttcttctcctccatgcactctaccatcttgtaaa 7877250  T
Q  201 ccctaattttacaggaaggtaaaaaaccgatgagtgttataagccgagttttaaaaaccgatgatagtgtcattaaaccgggaaaacaccggattgaacc 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7877249 tcctaattttacaggaaggtaaaaaaccgatgagtgttataagccgagttttaaaaaccgatgatagtgtcattaaatcgggaaaacaccggattgaacc 7877150  T
Q  301 ggctgaaacnnnnnnncttgtgcggaacacgaaatagcggcagtttgcctaaaatgaccttgattttaaaaaacttttgagggtagtttggattgatgga 400  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7877149 ggctgaaacaaaaaaacttgtgcggaacacgaaatagcggcagtttgcctaaaatgaccttgattttaaaaaactttcgagggtagtttggattgatgga 7877050  T
Q  401 ttaaaagttgtgcattggatgccaatgtcaatttatttggctatattttctgctgtttaacttttaaatgtgcaaaatataaaatggatatataaaacta 500  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7877049 ttaaaagttgtgcattggatgccagtgtcaatttatttggctatattttctgctgtttaacttctaaatgtgcaaaatataaaatggatatataaaacta 7876950  T
Q  501 gtgggaaatctatgcattgtt 521  Q
    |||||||||||||||||||||    
T  7876949 gtgggaaatctatgcattgtt 7876929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 7774178 - 7774575
Alignment:
Q  1 gtgcattgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagac 100  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||    
T  7774178 gtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagac 7774277  T
Q  101 ttcaccggcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgnnnnnnnnnnnnnnnnnnccgtgcactctaccatcttgtaaa 200  Q
    |||||||||| ||  |||| |||||| ||||||||||||||||||||||||||| |||                   ||||| |||||||||||||||||    
T  7774278 ttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatacggcagtgtcttctgcttcttctcctgcgtgctctctaccatcttgtaaa 7774377  T
Q  201 ccctaattttacaggaaggtaaaaaaccgatgag---tgttataagccgagttttaaaaaccgatgatagtgtcattaaaccgggaaaacaccggattga 297  Q
    |||||||||||||| |||| |||| | |||| ||   ||||||||||||||||||||||| || |||||||||||||||||| || ||| || |||||||    
T  7774378 ccctaattttacagaaagggaaaataacgatcagtgttgttataagccgagttttaaaaatcggtgatagtgtcattaaaccagggaaaaactggattga 7774477  T
Q  298 accggctgaaac---nnnnnnncttgtgcggaacacgaaatagcggcagtttgcctaaaatgaccttgattttaaaaaacttttgagggtagtttgga 392  Q
    ||||||||||||          |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||| |||||||||||    
T  7774478 accggctgaaacaaaaaaaaaacttgtgcggaacacgaaatagcagcagtttgccaaaactgaccttgattttaaaaaagttttgaaggtagtttgga 7774575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 7904749 - 7904611
Alignment:
Q  13 ggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaac 112  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||||    
T  7904749 ggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaac 7904650  T
Q  113 caaatcaggatttggataatcaattcatgaggaagatac 151  Q
    || |||| |||||| |||||||||||| |||||||||||    
T  7904649 cacatcaagatttgaataatcaattcacgaggaagatac 7904611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 7908038 - 7907901
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||| ||   | ||||||||| |||||||||||||||||||||  |    
T  7908038 agttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctca 7907939  T
Q  117 tcaggatttggataatcaattcatgaggaagatacggc 154  Q
      ||||| |||| |||||||||||||||||||||||||    
T  7907938 gtaggatctggaaaatcaattcatgaggaagatacggc 7907901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 7771117 - 7770983
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    |||||||||||||||||| |||| |  |||||||||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||  |    
T  7771117 agttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctca 7771018  T
Q  117 tcaggatttggataatcaattcatgaggaagatac 151  Q
    |||| |||||||| || | ||||||||| ||||||    
T  7771017 tcagaatttggattattagttcatgaggcagatac 7770983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 7789802 - 7789668
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    |||||||||||||||||| |||| |  ||||| ||||||| |||||||||   |||||||| ||||||||||| |||||||||||||||||||||||  |    
T  7789802 agttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctca 7789703  T
Q  117 tcaggatttggataatcaattcatgaggaagatac 151  Q
    |||| |||||||| |||| ||||||||| ||||||    
T  7789702 tcagaatttggattatcagttcatgaggcagatac 7789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 45372424 - 45372549
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatc 118  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||   ||||||||  ||||||||||||||||||||||||||||||||||  |      
T  45372424 ttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagt 45372523  T
Q  119 aggatttggataatcaattcatgagg 144  Q
    || ||||| || ||||||||||||||    
T  45372524 agaatttgaatcatcaattcatgagg 45372549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 7822688 - 7822548
Alignment:
Q  11 gtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggca 110  Q
    ||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||   |||||||  || ||||||||||||||| ||||||||||||    
T  7822688 gtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggca 7822589  T
Q  111 accaaatcaggatttggataatcaattcatgaggaagatac 151  Q
    |||  | || |||| |||| ||||| | |||||| ||||||    
T  7822588 acctcaacaagattaggattatcaaatgatgaggcagatac 7822548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 45366583 - 45366718
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    ||||||||||||||||||||||| |  | ||||   |||||||||||||||||   |||||||| ||| ||||||||||||||||||||||| || ||||    
T  45366583 agttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacc 45366682  T
Q  114 aaatcaggatttggataatcaattcatgaggaagat 149  Q
      |  ||||||||||| |||||||||||||||||||    
T  45366683 ttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 48862957 - 48862827
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    ||||||||||||||||||||||| |  ||||||   |||||||||||||||||   ||| |||| |||||||||||| ||||||||||||||||| ||||    
T  48862957 agttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaacc 48862858  T
Q  114 aaatcaggatttggataatcaattcatgagg 144  Q
      | ||||||| |||| ||||||||||||||    
T  48862857 ttagcaggattaggatgatcaattcatgagg 48862827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 7800356 - 7800218
Alignment:
Q  11 gtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggca 110  Q
    ||||||| |||||| ||||||||||||||   ||||||||||| |||||||||||||   |||||||  || ||||||||||||||| ||||||||||||    
T  7800356 gtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggca 7800257  T
Q  111 accaaatcaggatttggataatcaattcatgaggaagat 149  Q
    |||  | || |||| |||| ||||| |||||||| ||||    
T  7800256 acctcaacaagattaggattatcaaatcatgaggcagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 7813199 - 7813061
Alignment:
Q  11 gtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggca 110  Q
    ||||||| |||||| ||||| |||||||| | ||| |||||||||||||||||||||   |||||||  || ||||||||||||||| ||||||||||||    
T  7813199 gtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggca 7813100  T
Q  111 accaaatcaggatttggataatcaattcatgaggaagat 149  Q
    |||  | || |||| |||| ||||| |||||||| ||||    
T  7813099 acctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 49041503 - 49041629
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||   ||| |||| |||||||||||  |||||||||||||| ||||| |  |    
T  49041503 agttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctca 49041602  T
Q  117 tcaggatttggataatcaattcatgag 143  Q
    | || ||| |||| |||||||||||||    
T  49041603 ttagaattaggatgatcaattcatgag 49041629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 7238086 - 7238219
Alignment:
Q  18 gttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaat 117  Q
    |||| ||||||||||||||||| |  || ||||||||||||||||||||   ||||||||  ||||||||||  |||||||||||||| |||||||  ||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcat 7238185  T
Q  118 caggatttggataatcaattcatgaggaagatac 151  Q
    ||| |||||||| || | ||||||||| ||||||    
T  7238186 cagaatttggatgattagttcatgaggcagatac 7238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 7786156 - 7786060
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    ||||| ||||||||||||||||| |  ||||||||||||| ||||| |||||||||||||| |||||||||   ||||||||| |||||||||||||    
T  7786156 agttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacc 7786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 48156794 - 48156914
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatc 118  Q
    ||||||||| |||||||||||||  | ||| |||||||||||||||||   |||||||| ||| |||||||||| ||||||||||||||| ||||| |      
T  48156794 ttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaa 48156893  T
Q  119 aggatttggataatcaattca 139  Q
    |||||||| || |||||||||    
T  48156894 aggatttgaattatcaattca 48156914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 48891122 - 48890990
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    ||||||||||| |||||||||||||  ||||| |||| ||||||||||||   |||||||| |||||||||||||||||||||||| ||||  ||||  |    
T  48891122 agttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctca 48891023  T
Q  117 tcaggatttggataatcaattcatgaggaagat 149  Q
     ||  |||| ||||||||| || ||||||||||    
T  48891022 acataatttcgataatcaactcgtgaggaagat 48890990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 48870258 - 48870164
Alignment:
Q  14 gtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 108  Q
    ||||| |||||||||||||||||||||  |||||| ||||||||| |||||||   |||||||| |||||||||||| |||||||| ||||||||    
T  48870258 gtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 48870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 48885944 - 48885850
Alignment:
Q  14 gtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 108  Q
    ||||| |||||||||||||||||||||  |||||| ||||||||| |||||||   |||||||| |||||||||||| |||||||| ||||||||    
T  48885944 gtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 48885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 33134190 - 33134325
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaa 115  Q
    ||||||||||||||||||||| |  ||||||   |||||||||||||| ||  ||||||||| |||||||||||| ||||||||||||||||| || |      
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctc 33134289  T
Q  116 atcaggatttggataatcaattcatgaggaagatac 151  Q
    | ||| ||  |||| |||||||||||||| ||||||    
T  33134290 aacagaataaggatgatcaattcatgaggcagatac 33134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 7765334 - 7765238
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    ||||| ||||||||||||||||| |  ||||||||||||| ||||||||||| |||||||||||| ||||||  ||  |||||||||||||| ||||    
T  7765334 agttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacc 7765238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 49044599 - 49044730
Alignment:
Q  22 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 121  Q
    |||||||||||||||||| | ||  | |||||||||||||||||||| ||||||||  || |||||||||| ||||||| |||| |||||||  | |||     
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcaga 49044698  T
Q  122 atttggataatcaattcatgaggaagatacgg 153  Q
    ||  |||| ||||| |||||||| ||||||||    
T  49044699 ataaggatgatcaagtcatgaggcagatacgg 49044730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 33133718 - 33133616
Alignment:
Q  49 agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgaggaaga 148  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||  || ||||  | ||| ||  |||| |||||||||||||| |||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaaccttagcagaataaggatgatcaattcatgaggcaga 33133619  T
Q  149 tac 151  Q
    |||    
T  33133618 tac 33133616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 48902635 - 48902526
Alignment:
Q  45 gatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgagg 144  Q
    ||||||| ||||||||||||||   ||||||||  ||||||||||| || |||||||| |||||||||||   ||  |||||||| ||||||||||||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgagg 48902536  T
Q  145 aagatacggc 154  Q
     |||||||||    
T  48902535 tagatacggc 48902526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 48875563 - 48875474
Alignment:
Q  13 ggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 102  Q
    ||||||||||||||||||||||| ||||| ||| || ||||| |||||||||||   ||| |||| |||||||||||| || ||||||||    
T  48875563 ggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 49048977 - 49049095
Alignment:
Q  30 aatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggat 129  Q
    |||||||||||| ||  | |||||||||||||||||||| ||||||||  || |||||||||| ||||||| ||||| ||||||    ||| ||| ||||    
T  49048977 aatttgcaaaatgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacc--tgcagaattaggat 49049074  T
Q  130 aatcaattcatgaggaagata 150  Q
    |||||| |||||||| |||||    
T  49049075 aatcaagtcatgaggcagata 49049095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 37827359 - 37827447
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 105  Q
    ||||||||||||||||||||||| | ||||| ||| |||||||  ||||||  |||||||| |||| | |||| |||||||||||||||    
T  37827359 agttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 48735682 - 48735776
Alignment:
Q  22 aaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    ||||||||||||||||||||  | ||||   |||||||||||||||||   ||||||||  ||||||||||| ||||||||||||||||| ||||    
T  48735682 aaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacc 48735776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 50668756 - 50668660
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    |||| |||||| ||||| ||||||||| |||| ||||| |||||||||||    ||||||| ||| ||||||||||||||| | ||||| |||||||    
T  50668756 agttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacc 50668660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 7907865 - 7907830
Alignment:
Q  184 ctctaccatcttgtaaaccctaattttacaggaagg 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  7907865 ctctaccatcttgtaaaccctaattttacaggaagg 7907830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 47207655 - 47207513
Alignment:
Q  9 tggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 108  Q
    ||||||| |||| |||||||||||| | |||||  || || ||||| |||||||| ||   ||| ||||  |  || |||||||||||||||||||||||    
T  47207655 tggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccgg 47207556  T
Q  109 caaccaaatcaggatttggataatcaattcatgaggaagatac 151  Q
     ||| | |  ||||||  ||| |||||||||||||||||||||    
T  47207555 taactataataggattaagatgatcaattcatgaggaagatac 47207513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 45385158 - 45385275
Alignment:
Q  23 aaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagga 122  Q
    |||||||||| |||||| | || ||| ||||  |||||||||||   |||||||| | ||||||||||||| |||||||| || || ||||  |  ||||    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtagga 45385257  T
Q  123 tttggataatcaattcat 140  Q
    ||||||| ||||||||||    
T  45385258 tttggatcatcaattcat 45385275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 48148043 - 48148138
Alignment:
Q  13 ggtgagttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 105  Q
    |||||||| ||||||||||||||| || |  ||||||   |||||||||||||||||   |||||| |  ||||||||||| ||||||||||||||    
T  48148043 ggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcac 48148138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 48170953 - 48171044
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccg 107  Q
    ||||||||| ||||||||||| |  ||||||   |||||||||| ||||||   ||||||||  ||||||||||||| ||||||||||||||    
T  48170953 ttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccg 48171044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 50251166 - 50251222
Alignment:
Q  10 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacca 66  Q
    |||||| |||||||||||  |||||||| | | ||||||||||||||||||||||||    
T  50251166 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 50251222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 48898438 - 48898347
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatc---agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 105  Q
    ||||||||||||||||||||||| | || |||   ||||||||| || |||||   ||||||||  || ||||||||| |||||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 12195006 - 12194881
Alignment:
Q  25 atgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatt 124  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||||||||  | |||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12194907  T
Q  125 tggataatcaattcatgaggaagata 150  Q
    || || || ||||||  |||||||||    
T  12194906 tgaatgattaattcagaaggaagata 12194881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 12439434 - 12439309
Alignment:
Q  25 atgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatt 124  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||||||||  | |||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12439335  T
Q  125 tggataatcaattcatgaggaagata 150  Q
    || || || ||||||  |||||||||    
T  12439334 tgaatgattaattcagaaggaagata 12439309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 15348573 - 15348479
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||| ||||    
T  15348573 ttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacc 15348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 12200008 - 12199886
Alignment:
Q  29 gaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttgga 128  Q
    ||||||||||| |  ||||||||||||||||||||||||  ||||||||  |||||||||| || ||||||||||||||||||||  | ||||||||| |    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  129 taatcaattcatgaggaagatac 151  Q
    | || ||||||| ||||| ||||    
T  12199908 tgattaattcataaggaatatac 12199886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 12444436 - 12444314
Alignment:
Q  29 gaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttgga 128  Q
    ||||||||||| |  ||||||||||||||||||||||||  ||||||||  |||||||||| || ||||||||||||||||||||  | ||||||||| |    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  129 taatcaattcatgaggaagatac 151  Q
    | || ||||||| ||||| ||||    
T  12444336 tgattaattcataaggaatatac 12444314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 4032283 - 4032368
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttca 104  Q
    ||||||||| ||||||||||| |  |||||||| |||||||  |||||    |||||||  || ||||||||||||||||||||||    
T  4032283 ttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 24309890 - 24309799
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 108  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||| |||||    
T  24309890 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 24309799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 24322171 - 24322079
Alignment:
Q  21 gaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaacc 113  Q
    |||| |||||||||||||||   ||||  |||||||||||||||||   |||||||| |||||||||||| ||||||||||||||| ||||||    
T  24322171 gaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacc 24322079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 17782561 - 17782626
Alignment:
Q  456 tttaacttttaaatgtgcaaaatataaaatggatatataaaactagtgggaaatctatgcattgtt 521  Q
    |||||||||||| |||| ||||  |||||||||||| ||||| |||||||||||||||||||||||    
T  17782561 tttaacttttaattgtgaaaaacttaaaatggatatgtaaaattagtgggaaatctatgcattgtt 17782626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 24340125 - 24339994
Alignment:
Q  19 ttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatc 118  Q
    |||||| |||||||||||||| |    |||||||||||| |||||||||  ||||||||   |||||||||| ||||||||||| ||||| ||||  |      
T  24340125 ttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaaccttact 24340026  T
Q  119 aggatttggataatcaattcatgaggaagata 150  Q
    | ||||| | | |||||||||| |||||||||    
T  24340025 aagattttggtgatcaattcatcaggaagata 24339994  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 24415546 - 24415417
Alignment:
Q  20 tgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatca 119  Q
    ||||| ||||||||||||||| ||| ||  || ||||||||||||||   ||||| || |||||||||||| ||||||||||| ||||| || |  |  |    
T  24415546 tgaaactgtgaatttgcaaaactgg-atttgaaataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaata 24415448  T
Q  120 ggatttggataatcaattcatgaggaagata 150  Q
    |||||||| | |||||||||| ||| |||||    
T  24415447 ggatttgggtgatcaattcatcaggcagata 24415417  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 29712834 - 29712925
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 108  Q
    |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||    
T  29712834 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 29695872 - 29695780
Alignment:
Q  10 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 102  Q
    |||||| ||||||||||||||||||||||| |  || | ||| |||||||| ||||||| |||||||| |||||||||||| |||||||||||    
T  29695872 ggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagactt 29695780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 1812138 - 1812050
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 105  Q
    |||||||||||  |||||||||| | |||||  ||||||||||||||||||| ||||||||  |||||| ||||||| ||| |||||||    
T  1812138 agttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcac 1812050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 178739 - 178605
Alignment:
Q  13 ggtgagttgaaaatgtgaatttgcaaaattgggatca---gagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggc 109  Q
    ||||||||||||||| |||  |||||||| || ||||   ||||| ||||| |||||   ||||||||  ||||||||||| ||||||||||| || ||     
T  178739 ggtgagttgaaaatgggaaagtgcaaaatgggtatcattggagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggt 178640  T
Q  110 aaccaaatcaggatttggataatcaattcatgagg 144  Q
    || | ||  ||||||||||| ||||||||| ||||    
T  178639 aagcgaagtaggatttggatgatcaattcaagagg 178605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 42562728 - 42562787
Alignment:
Q  49 agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccgg 108  Q
    |||||| |||||||||||   |||||||| |||||||||||| |||||||| ||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 42562787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 29687764 - 29687676
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 105  Q
    ||||||||||| ||||||||||| |  || | ||| || |||||||||||   ||||||||  || ||||| |||||||||||||||||    
T  29687764 agttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 11024902 - 11025029
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    |||| |||||| || |||||||| ||  |||||||||||||||  ||||||  |||||||| ||||||||||||||| |||||||||||||| ||||  |    
T  11024902 agttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctca 11025001  T
Q  117 tcaggatttggataatcaattcatgagg 144  Q
     || |||||| || ||||||||||||||    
T  11025002 acatgatttgtatgatcaattcatgagg 11025029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 47452299 - 47452406
Alignment:
Q  44 ggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcaggatttggataatcaattcatgag 143  Q
    ||||||||||||||||||||||||  |||| ||||||| ||||| |||| ||||||||||||||||||||  | || ||| ||||| ||||||||| |||    
T  47452299 ggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattcaagag 47452398  T
Q  144 gaagatac 151  Q
    | ||||||    
T  47452399 gtagatac 47452406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 11015890 - 11016024
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaa 116  Q
    |||| |||||| || |||||||| ||  |||||||||||||||  ||| ||  |||||||| ||||||||||||||| |||||||||||||| ||||  |    
T  11015890 agttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctca 11015989  T
Q  117 tcaggatttggataatcaattcatgaggaagatac 151  Q
     || |||||| || |||||||||||||| ||||||    
T  11015990 acatgatttgtattatcaattcatgaggcagatac 11016024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 11006332 - 11006461
Alignment:
Q  22 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 121  Q
    |||||| || |||||||| |  ||||||||||||||||  ||||||  ||||||||  || |||||||||||||| ||||||||||||||||  | || |    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  122 atttggataatcaattcatgaggaagatac 151  Q
    ||||| || |||||||||||||| ||||||    
T  11006432 atttgtatgatcaattcatgaggcagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 11975 - 11890
Alignment:
Q  17 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 102  Q
    ||||||||||||||||||||||| |    ||||||||||||||||||||||  |||||||| | |||||||||| |||||||||||    
T  11975 agttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 21015484 - 21015355
Alignment:
Q  22 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 121  Q
    |||||||||| ||||||| | ||  | |||||||||||||||| ||| ||||||||  || |||||||||| ||||||| | ||||| ||||  | ||      
T  21015484 aaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaa 21015385  T
Q  122 atttggataatcaattcatgaggaagatac 151  Q
    ||| |||| |||||||| ||||| ||||||    
T  21015384 attaggatgatcaattcttgaggcagatac 21015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 21980014 - 21980143
Alignment:
Q  22 aaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccggcaaccaaatcagg 121  Q
    |||||||||||| ||||| ||||||| |||||| |||||||||||   ||||||||  || |||||||||   |||||||| || ||  |||  | ||||    
T  21980014 aaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactttactggttaccttagcagg 21980113  T
Q  122 atttggataatcaattcatgaggaagatac 151  Q
    |||| ||| |||| ||||||||| ||||||    
T  21980114 atttcgattatcagttcatgaggcagatac 21980143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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