View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5343_low_7 (Length: 539)

Name: NF5343_low_7
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5343_low_7
NF5343_low_7
[»] chr5 (24 HSPs)
chr5 (6-532)||(17419245-17419771)
chr5 (378-507)||(30225685-30225814)
chr5 (29-134)||(29870805-29870912)
chr5 (1-99)||(30243721-30243819)
chr5 (29-111)||(30339902-30339984)
chr5 (29-134)||(30481951-30482058)
chr5 (29-106)||(30398663-30398740)
chr5 (445-525)||(30247474-30247554)
chr5 (29-101)||(30748297-30748369)
chr5 (29-106)||(30434471-30434548)
chr5 (29-122)||(29851932-29852025)
chr5 (32-106)||(30058937-30059011)
chr5 (63-111)||(30678644-30678692)
chr5 (326-388)||(30247409-30247471)
chr5 (31-98)||(29710349-29710416)
chr5 (29-95)||(17981534-17981600)
chr5 (32-94)||(30397937-30397999)
chr5 (29-98)||(30473963-30474032)
chr5 (476-513)||(29848649-29848686)
chr5 (476-513)||(29868332-29868369)
chr5 (419-515)||(30201042-30201139)
chr5 (40-93)||(30202743-30202796)
chr5 (1-94)||(30246149-30246242)
chr5 (30-94)||(30205102-30205166)
[»] chr7 (2 HSPs)
chr7 (318-530)||(26705319-26705531)
chr7 (29-104)||(26705914-26705989)
[»] chr4 (5 HSPs)
chr4 (45-99)||(20298140-20298194)
chr4 (453-512)||(5994578-5994637)
chr4 (29-103)||(13615444-13615518)
chr4 (318-419)||(5994636-5994737)
chr4 (18-98)||(20303995-20304074)
[»] chr1 (1 HSPs)
chr1 (41-104)||(7097997-7098060)


Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 6 - 532
Target Start/End: Original strand, 17419245 - 17419771
Alignment:
Q  6 gagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagt 105  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419245 gagtttctgaacatttatgactccccaacattagaggaacgatgcaaggagggaaccggggaggattgggacaagatagctcatattccaaaaataaagt 17419344  T
Q  106 taaagtattaagaagcaagagacgtttacaggtaggatctctatttccccttcttacatgtacgatgcaattgacttgatttttattcaaaaatctttat 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419345 taaagtattaagaagcaagagacgtttacaggtagaatctctatttccccttcttacatgtacgatgcaattgacttgatttttattcaaaaatctttat 17419444  T
Q  206 attttctcattgttgacttcttcagaaagagcaccagagtacatgaaaggtattttactgctcaacctaaggagaaattttctaatagttgtgcaggtaa 305  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  17419445 attttctcgttgttgacttcttcagaaagagcactagagtacatgaaagatattttactgctcaaccaaaggagaaattttctaatagttgtgcatgtaa 17419544  T
Q  306 ttttcttcatcatagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaa 405  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419545 ttttcttcatgatagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaa 17419644  T
Q  406 ggctctgcagtggaagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtgctgcacaattctgcctttggttgaaact 505  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  17419645 ggctctgcagtggaagttattatgattgctgatttcccccattagttgattgagctccttcaacagattgtgctgcacaattctgcatttggttgaaact 17419744  T
Q  506 tcaatctgctttcttatgtagaataat 532  Q
    |||||||||||||||||||| ||||||    
T  17419745 tcaatctgctttcttatgtaaaataat 17419771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 378 - 507
Target Start/End: Original strand, 30225685 - 30225814
Alignment:
Q  378 agggaagcaaaaatataaatgtgtgtaaggctctgcagtggaagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtg 477  Q
    ||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  30225685 agggaagcaaagacataaatgtgtgtaatgctctgcagtgcaagttcttatgattgctgatttccgccattagttgattgagctccttcaacagattgtg 30225784  T
Q  478 ctgcacaattctgcctttggttgaaacttc 507  Q
    ||||||||||||||||||||||||||||||    
T  30225785 ctgcacaattctgcctttggttgaaacttc 30225814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 29870912 - 29870805
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaa---agtattaagaagcaaga 125  Q
    ||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||| |||| |||| |   || |||||||||| |||    
T  29870912 cccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaataatacagtttaccgaggattaagaagc-aga 29870814  T
Q  126 gacgtttac 134  Q
    |||||||||    
T  29870813 gacgtttac 29870805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30243721 - 30243819
Alignment:
Q  1 ctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaa 99  Q
    |||||||| || |||| |||||| | |  |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  30243721 ctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaa 30243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 30339902 - 30339984
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaaagt 111  Q
    ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  30339902 cccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaatatacagtttaagt 30339984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 30482058 - 30481951
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaa---agtattaagaagcaaga 125  Q
    ||||||||||||||| |||||||| || |||||  |||||||||||||||||||||||||||||||||||||| |||| |   || |||||||||| |||    
T  30482058 cccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagc-aga 30481960  T
Q  126 gacgtttac 134  Q
    |||||||||    
T  30481959 gacgtttac 30481951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 30398740 - 30398663
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 106  Q
    |||||||||| |||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  30398740 cccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaatacagtt 30398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 525
Target Start/End: Original strand, 30247474 - 30247554
Alignment:
Q  445 cattagttgattgagctccttcaacagactgtgctgcacaattctgcctttggttgaaacttcaatctgctttcttatgta 525  Q
    ||||||||||||||||| ||||||||||  |||||||||| |||| |||||||||||| ||||||| ||||||||||||||    
T  30247474 cattagttgattgagcttcttcaacagatagtgctgcacagttctccctttggttgaagcttcaatttgctttcttatgta 30247554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 30748369 - 30748297
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaata 101  Q
    ||||||||||||||| |||||||| || |||||  ||||||||||||||||||||||||||||||||||||||    
T  30748369 cccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattccaaaaata 30748297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 30434548 - 30434471
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 106  Q
    |||||||||| |||| |||||||| || ||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  30434548 cccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaagaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 29852025 - 29851932
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagca 122  Q
    ||||||||||||||| |||||||| |  |||||  | |||||||||||||||||| ||||||||||||| ||| |||| || ||||||||||||    
T  29852025 cccaacattagaggaacgatgcaaagtgggaacatgtgaggattgggacaagatatctcatattccaaatatacagtttaactattaagaagca 29851932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 30059011 - 30058937
Alignment:
Q  32 aacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 106  Q
    ||||||| |||| ||||||||| |  |||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  30059011 aacattaaaggaacgatgcaagaagcgaacaggggaggattgggacaagatatctcatattccaaaaatacagtt 30058937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 30678644 - 30678692
Alignment:
Q  63 ggggaggattgggacaagatagctcatattccaaaaataaagttaaagt 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30678644 ggggaggattgggacaagatagctcatattccaaaaatacagtttaagt 30678692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 30247409 - 30247471
Alignment:
Q  326 atgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaa 388  Q
    |||||| ||||| |||||||| ||||||||||||||||||||||||||  | |||||||||||    
T  30247409 atgtgctggaatcacttgcttattacactgttgttggaacatatattgagtgagggaagcaaa 30247471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 29710349 - 29710416
Alignment:
Q  31 caacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaa 98  Q
    ||||||||||||| ||||||||||| ||| |  ||||||||| |||||||||||| ||| ||||||||    
T  29710349 caacattagaggaacgatgcaaggagggagcaagggaggattaggacaagatagcgcatgttccaaaa 29710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 17981600 - 17981534
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattcca 95  Q
    ||||||||| ||| |||||||||| || |||||||| || || |||||||||||||| |||||||||    
T  17981600 cccaacattggagaagcgatgcaatgagggaaccggagaagactgggacaagatagcccatattcca 17981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 30397999 - 30397937
Alignment:
Q  32 aacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattcc 94  Q
    |||||||||||||| ||||||||||||||| || ||||| ||| |||||||||| | ||||||    
T  30397999 aacattagaggagcaatgcaaggacggaacaggagaggactggaacaagatagcacgtattcc 30397937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 30474032 - 30473963
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaa 98  Q
    |||||||||| |||||||||  ||| | |||||||| ||||| |||||||||||||| || |||||||||    
T  30474032 cccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagatagcgcacattccaaaa 30473963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 29848686 - 29848649
Alignment:
Q  476 tgctgcacaattctgcctttggttgaaacttcaatctg 513  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  29848686 tgctgtacaattctgcttttggttgaaacttcaatctg 29848649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 29868369 - 29868332
Alignment:
Q  476 tgctgcacaattctgcctttggttgaaacttcaatctg 513  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  29868369 tgctgcacaattctgcttttagttgaaacttcaatctg 29868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 515
Target Start/End: Complemental strand, 30201139 - 30201042
Alignment:
Q  419 aagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtgctgcacaattctgccttt-ggttgaaacttcaatctgct 515  Q
    |||||||||||||||||||| |  || || ||||||||||||| || ||| |||   |||| || |||||||| ||| | ||||||||||||||||||    
T  30201139 aagttcttatgattgctgatctttcctatgagttgattgagcttctccaaaagatattgctacataattctgcttttagtttgaaacttcaatctgct 30201042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 30202796 - 30202743
Alignment:
Q  40 aggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattc 93  Q
    |||| ||||||||||| ||||| |||||| | |||||||||||||| |||||||    
T  30202796 aggaacgatgcaaggagggaacaggggagaactgggacaagatagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30246149 - 30246242
Alignment:
Q  1 ctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattcc 94  Q
    |||| ||| ||||||| ||| || | || ||||||||| |||||||||||||| | |  ||  |||||||| ||||||||||| ||||||||||    
T  30246149 ctctcgaggttctgaatattcatcattctccaacattaaaggagcgatgcaagaaggagacatgggaggatcgggacaagatatctcatattcc 30246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 30205166 - 30205102
Alignment:
Q  30 ccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattcc 94  Q
    |||||| |||| |||||||||||||| ||||| || ||||| ||| |||||||| | ||||||||    
T  30205166 ccaacactagaagagcgatgcaaggagggaacaggagaggactggtacaagatatcgcatattcc 30205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 318 - 530
Target Start/End: Complemental strand, 26705531 - 26705319
Alignment:
Q  318 tagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaaggctctgcagtg 417  Q
    |||||||| ||| |||||||||||| |||  ||||| |||  ||||||||||||||  | ||||||||||| |||||||||||||||| ||||| || ||    
T  26705531 tagtatctctgttcaggaattacttacttaatacacagtttatggaacatatattgagtgagggaagcaaagatataaatgtgtgtaatgctctacaatg 26705432  T
Q  418 gaagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtgctgcacaattctgcctttggttgaaacttcaatctgcttt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  26705431 gaagttcttatgattgctgatttcccccattagttgattgagcttcttcaacagatagtgctgcacaattctgcctttggttgaaacttcaatttgcttt 26705332  T
Q  518 cttatgtagaata 530  Q
    |||||||| ||||    
T  26705331 cttatgtaaaata 26705319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 26705989 - 26705914
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaag 104  Q
    ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26705989 cccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaag 26705914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 20298140 - 20298194
Alignment:
Q  45 cgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaa 99  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  20298140 cgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaa 20298194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 512
Target Start/End: Complemental strand, 5994637 - 5994578
Alignment:
Q  453 gattgagctccttcaacagactgtgctgcacaattctgcctttggttgaaacttcaatct 512  Q
    |||||| ||||| ||| ||| |||||| ||||||||||| ||||||||||||||||||||    
T  5994637 gattgaactcctccaaaagattgtgctacacaattctgcttttggttgaaacttcaatct 5994578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 13615518 - 13615444
Alignment:
Q  29 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaa 103  Q
    |||||||||  || ||||||||||||| |||||  |||| || |||||||||||||| |||||||||||| ||||    
T  13615518 cccaacattgaagaagcgatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaactaaa 13615444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 5994737 - 5994636
Alignment:
Q  318 tagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaaggctctgcagtg 417  Q
    |||| ||||| ||||||||| |||||||| |||||| |||  |||||||||  |||| | || |||||  | |||||||||||||||  |||| ||||||    
T  5994737 tagtttctatttgcaggaatcacttgcttattacacagttactggaacatactttgtgtgagtgaagccgatatataaatgtgtgtagtgctcagcagtg 5994638  T
Q  418 ga 419  Q
    ||    
T  5994637 ga 5994636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 20303995 - 20304074
Alignment:
Q  18 atttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaa 98  Q
    |||||||| | |||||||||| |||| || ||||||   ||||| || ||||||||| |||||||||| ||||||||||||    
T  20303995 atttatgaatgcccaacattaaaggaacggtgcaagacgggaacaggcgaggattgg-acaagatagcgcatattccaaaa 20304074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 7098060 - 7097997
Alignment:
Q  41 ggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaag 104  Q
    ||||||||||||||| ||||| ||||| || |||||||||||||| |||||||||||| |||||    
T  7098060 ggagcgatgcaaggagggaacaggggaagactgggacaagatagcccatattccaaaactaaag 7097997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University