View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_9 (Length: 447)
Name: NF5343_low_9
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 156 - 436
Target Start/End: Original strand, 17433814 - 17434094
Alignment:
| Q |
156 |
gccaaaatgaaatatattaacaagaacaaaaccgcatctccagcacaaggtgtgccacaagagtgcaactaaagtaaagttaacaaacagagaccaaaaa |
255 |
Q |
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| T |
17433814 |
gccaaaatgaaatatattaacaagaacaaaaccgcatctccagcacaaggcgtgccacaagagtgcaactaaagtaaagttaacaaacagagaccaaaaa |
17433913 |
T |
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| Q |
256 |
taaaactgacaaggctagcaaatgcctaaacaagttatcggacacgctagccagctctgacctcctaaacagaaaacaacgttagccgccttcatccatc |
355 |
Q |
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| T |
17433914 |
taaaactgacaaggctagcaaatgcctaaacaagttatcggacacgccagccagctgtgacctcctaaacagaaaataacgttagctgccttcatccatc |
17434013 |
T |
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| Q |
356 |
agtacgagtgaatcttaactttttccaacaagctacacatattggtttccttgtttctaaaaagcctattatcacgttcat |
436 |
Q |
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| T |
17434014 |
agtacgagtgaatcttaactttttccaacaagctacacatattggtttccttgtttctaaaaagcctattatcaccttcat |
17434094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 255 - 436
Target Start/End: Original strand, 10149921 - 10150101
Alignment:
| Q |
255 |
ataaaactgacaaggctagcaaatgcctaaacaagttatcggacacgctagccagctctgacctcctaaacagaaaacaacgttagccgccttcatccat |
354 |
Q |
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| T |
10149921 |
ataaaactgacaaggttagccaatgcctaaacaagctagcgggcatgtcaaccagctgtgacctcctaaaatgaaaacatcatg-gatgccttcatccac |
10150019 |
T |
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| Q |
355 |
cagtacgagtgaatcttaactttttccaacaagctacacatattggtttccttgtttctaaaaagcctattatcacgttcat |
436 |
Q |
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| T |
10150020 |
caatacgagtgaatcttgactttttccaacaagctacacatattgatttccttgtttctaaaaagcctattattgcgttcat |
10150101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 34948449 - 34948401
Alignment:
| Q |
329 |
aaacaacgttagccgccttcatccatcagtacgagtgaatcttaacttt |
377 |
Q |
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| T |
34948449 |
aaacaacattagccgccttcatccactaatacgagtgaattttaacttt |
34948401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 386
Target Start/End: Complemental strand, 17179729 - 17179499
Alignment:
| Q |
152 |
agaggccaaaatgaaatatattaacaagaacaaaaccgcatctccagcacaaggtgtgccacaagagtgcaactaaagtaaagttaacaaacagagacca |
251 |
Q |
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|||||| |||||||||||||||||||| |||||| |||| ||||||||| ||| ||| |||| |||||||||||| | ||||||| |||||| |
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| T |
17179729 |
agaggcaaaaatgaaatatattaacaataacaaagtcgcaatcccagcacaaaatgttccaaaagaatgcaactaaagt-----tcacaaacacagacca |
17179635 |
T |
|
| Q |
252 |
aaaataa-aactgacaaggctagcaaatgcctaaacaagttatcggacacgctagccagctctgacctcctaaacagaaaacaacgttagccgccttcat |
350 |
Q |
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||||||| |||| ||||||||||| |||||| ||||||| | |||||||| |||| || ||||| |||||| |||||||| |||||||||||||| |
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| T |
17179634 |
aaaataacaactaacaaggctagccaatgcccaaacaagcgagcggacacggctgccaactgtgaccccctaaaacaaaaacaacattagccgccttcat |
17179535 |
T |
|
| Q |
351 |
ccatcagtacgagtgaatcttaactttttccaacaa |
386 |
Q |
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| T |
17179534 |
ccaccaatacgagtgaattttgactttttctaacaa |
17179499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 9424909 - 9425005
Alignment:
| Q |
337 |
ttagccgccttcatccatcagtacgagtgaatcttaactttttccaacaagctacacatattggtttccttgtttctaaaaagcctattatcacgttc |
434 |
Q |
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| T |
9424909 |
ttagctgccttcatccaccaatccaagtgaattttgactttttccaacaag-tataaatattggttgccttgtttccaaatagcctattattacgttc |
9425005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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