View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5344-Insertion-1 (Length: 580)
Name: NF5344-Insertion-1
Description: NF5344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5344-Insertion-1 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 32640089 - 32640429
Alignment:
| Q |
9 |
gactcagacacggatatcagactcatatgtcaacacctgtagtaatttaaggaaatgaattaattgttgaatgtaatcacatgtgttggtgatactgaca |
108 |
Q |
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| T |
32640089 |
gactcagacacggacatcatactcatatgtcaacacctgtagtaatttaagaaaatgaattaattgttgaatgtaatcacatgtgtcggtgatactgaca |
32640188 |
T |
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| Q |
109 |
catgtcagacatccaacatgcaccttcgattggaggtgtccgtgttacagagctcttttttatgtttcacgaataactttgagttttgattacagacaat |
208 |
Q |
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| T |
32640189 |
catgtcagacatccaacatgcaccttcgattggaggtgtccgtgttacagtgctcttttttatttttcacgaataactttgaattttgattacagacaat |
32640288 |
T |
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| Q |
209 |
tgattatatcattacttataaaatataagaaaagaatttggccctagtttgtctttggaaaattccaaaccataagaaaccagtggattatagcaaattg |
308 |
Q |
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| T |
32640289 |
tgattatatcattacttataaaatataagaaaagaatttggccctagtttgtctttggaaaattccaaaccataagaaaccagtggattatagcaaattg |
32640388 |
T |
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| Q |
309 |
atgataccttctatgttgtttttctactcttgtaattgagc |
349 |
Q |
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| T |
32640389 |
atgataccttctatgttgtttttctactcttgtaattgagc |
32640429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 404 - 580
Target Start/End: Original strand, 32640484 - 32640658
Alignment:
| Q |
404 |
catgattgaaaattaaacaattgctagctaaacttgaatttgttgtgctttgtttaagcaggcaaataagaaaattgaagatgctaagttggcaagagat |
503 |
Q |
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| T |
32640484 |
catgattgaaaattaag--attgctagctaaacttgaatttgttgtgctttgtttaagcaggcaaataagaaaattgaagatgctaagttggcaagagat |
32640581 |
T |
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| Q |
504 |
ttccaaaccacattgcaagaatttcagaaagttcaacagcttgcttctgagcgtgaatcagcttatactcctgctgc |
580 |
Q |
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| T |
32640582 |
ttccaaaccacattgcaagaatttcagaaagttcaacagcttgcttctgagcgtgaatcagcttatactcctgctgc |
32640658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 404 - 580
Target Start/End: Complemental strand, 11239 - 11068
Alignment:
| Q |
404 |
catgattgaaaattaaacaattgctagctaaacttgaatttgttgtgctttgtttaagcaggcaaataagaaaattgaagatgctaagttggcaagagat |
503 |
Q |
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| T |
11239 |
catgattgaaaattaag--attgctagctaaacttgaatttgttgtgctttgtttaagtaggcaaataagaaaattgaagatgctaagttggcaagagat |
11142 |
T |
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| Q |
504 |
ttccaaaccacattgcaagaatttcagaaagttcaacagcttgcttctgagcgtgaatcagcttatactcctgctgc |
580 |
Q |
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| T |
11141 |
ttccaaaccacattgaaggaatttcagaaagttcaa---cttgcttctgagcgcgaatcaacttatactcctgctgc |
11068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 12663572 - 12663515
Alignment:
| Q |
424 |
ttgctagctaaacttgaatttgttgtgctttgtttaagcaggcaaataagaaaattga |
481 |
Q |
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| T |
12663572 |
ttgctagctaaacttgaatttgttgtgctttttttaagcaggaaaataagaaaattga |
12663515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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