View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5344_low_1 (Length: 449)
Name: NF5344_low_1
Description: NF5344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5344_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 27146675 - 27146330
Alignment:
| Q |
18 |
ttttcttatgatacaattgagaaccctaccaagaagtcaaagaaatctaaggattggtgcagaaataagagaatccaatagcaatagcaaaagatggaag |
117 |
Q |
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| T |
27146675 |
ttttcttttgacacaattgagtaccctaccaagaagtca--gaaatctaaggattggtgcagaaataagagaatccaatagcaatagcaaaagatggaag |
27146578 |
T |
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| Q |
118 |
tggataacgtatattatcataaatgacttgcaacaaaaccacaaaacaaaatatcttacattgcatgaacctttttcctctttctccttccaaagacaaa |
217 |
Q |
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| T |
27146577 |
tggataacgtatattatcataaatgacttgcaacaaaaccacaaaacaaaatatctgacattgcatgaacctttttcctctttctccttccaaacacaaa |
27146478 |
T |
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| Q |
218 |
gaaagacatcaaacaataacaatttggttgtagcaatgggtgtctctttcctctcaatctcaactcttccttctcttcatccacttggtggttctcgtta |
317 |
Q |
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| T |
27146477 |
gaaagacaccaaacaataacaatttggttgtagcaatgggtgtctctttcctctcaatctcaactcttccttctcttcatccacttggtggttctcatta |
27146378 |
T |
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| Q |
318 |
tccaaaaacaacttcaaccagacaccaacctcgttcagtaagtctttg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146377 |
tccaaaaacaacttcaaccagacaccaacctcgttcagtaagtctttg |
27146330 |
T |
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