View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5344_low_2 (Length: 444)
Name: NF5344_low_2
Description: NF5344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5344_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 34 - 332
Target Start/End: Complemental strand, 32640071 - 32639767
Alignment:
| Q |
34 |
gacaaattaatgaaataaaccaatgaagcacaaacactcaacgaattaggtgtcggacac-----------cgataaataagattacattaaattaaatt |
122 |
Q |
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| T |
32640071 |
gacaaattaatgaaataaaccaatgaagcacaaacactcaacgaattaggtgtaggacacgtgtctaacaccgataaataagattacattaaatta---- |
32639976 |
T |
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| Q |
123 |
atataattttcttagattattataggtgttgacgtccgtgtctttatgtgtgcttcgtggaaataaacaaatatgcaagaattaataataagtgaagcac |
222 |
Q |
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| T |
32639975 |
-tataattttgttagattattatcggtgttgacgtccgtgtctttatgtgtgcttcgtggaaataaacaaatatgcaagaattaataataagtgaagcac |
32639877 |
T |
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| Q |
223 |
ggcataacatacattggcattagaatcccgattagattcagacaaagatttaagcttagcagaagtatccttcacaagctgcgatatcctctgtcttgta |
322 |
Q |
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| T |
32639876 |
ggcataacatacattggcattagaatcccgattagattcagacaaagatttaagcttagcagaagtatccttcacaagctgcgatatcctctgtcttgta |
32639777 |
T |
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| Q |
323 |
ttatgcctac |
332 |
Q |
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| T |
32639776 |
ttatgcctac |
32639767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 55941027 - 55941067
Alignment:
| Q |
117 |
taaattatataattttcttagattattataggtgttgacgt |
157 |
Q |
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| T |
55941027 |
taaattatgtaattttcttaaattattattggtgttgacgt |
55941067 |
T |
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