View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345-Insertion-1 (Length: 1101)
Name: NF5345-Insertion-1
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 488
Target Start/End: Original strand, 27189791 - 27190269
Alignment:
| Q |
8 |
actcccacgctcttcatcatcctcctccgttcctccgcccaaagacctcaccggaatcgaaaacgtcgttgacaaactatcgccaccactccgtctcgct |
107 |
Q |
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| T |
27189791 |
actccctcgctcatcatcctcctcctccgttcctccgcccaaagacctcaccggaatcgaaaacgtcgtcgacaaactatcaccaccactccgtctcgct |
27189890 |
T |
|
| Q |
108 |
acatccgccgttgttattgctggcgcagtagccgcgggatttcatctcggctcgaaattcggtggaagtcgaaatgctgctgttggaggagcggttgctt |
207 |
Q |
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| T |
27189891 |
acatccgccgttgttattgccggcgcagtagccgcgggatttcatctcggctccaaattcggtggaagtcgaaatgctgctgttggaggagctgttgctt |
27189990 |
T |
|
| Q |
208 |
tgggtgcggctggtggtgcggctgcgtatgctcttaatgccatggcgccgcaagtcgcggctgtgaatttgcataactatgttgctgatcttgatcatcc |
307 |
Q |
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| T |
27189991 |
tgggtgcggctggtggtgcggctgcgtatgctcttaatgccatggcgccgcaggttgcggccgtgaatttgcataactatgttgctgatcttgatcatcc |
27190090 |
T |
|
| Q |
308 |
tttgttgttgaagaaggaagacattgataaaatcgccaataggtttatttgaattgatgtttaattttgtacgcgttaaatttattgtattatattatac |
407 |
Q |
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| T |
27190091 |
tttgttgttgaagaaggaagacattgagaatatcgccaataggtttatttgaattgatgtttaatattgtacgcgttaaacttattatattatactatac |
27190190 |
T |
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| Q |
408 |
tatacttacagtgacagtgtgatttaatttgatgaacgtgtaaaattattttacaccgtcattgcataacagttaatctcc |
488 |
Q |
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| T |
27190191 |
tatactgacagtgaca--gtgatttaatttgatgaacgtgtaaaattattttacaccgtcattgcataacagttaatctcc |
27190269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 508 - 970
Target Start/End: Original strand, 27190295 - 27190758
Alignment:
| Q |
508 |
ggagcagttaatctcctatattattatgagttacgagttatatattttcggttgatgatagtttattgagataaaaaatgtttcatggacaaccactttt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27190295 |
ggagcagttaatctcctatattattatgagttacgagttatatattttcggttgatgatagtttattgagataaaaaatgtttcatggacaaccactttt |
27190394 |
T |
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| Q |
608 |
tcataaaaacaaggttaattatgtgaaaaatatggttaatttgatttacattgataattatgggtagttcatgtagttgaatt--attaatcacaaattt |
705 |
Q |
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| T |
27190395 |
tcataaaaacaaggttaattatgtgaaaaatatggttaatttgatttacattgataattatgggtagtccatgtagttgaattgaattaatcacaaattt |
27190494 |
T |
|
| Q |
706 |
ggtcgtgaattgggttaacaatttactcaactgaattaaccacattttttaatgtcgttaactaggtgttttgcgagtgtacaaaaagtaggtgtccatg |
805 |
Q |
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| T |
27190495 |
gcttttgaattgaattaaaaatttattcaactgaattaacgacattttttaacgtctttaaccaggtgttt---gagtgtacaaaaagtaggtgtccatg |
27190591 |
T |
|
| Q |
806 |
tatcattactgtattgaaattgatgatgttgaca-nnnnnnnnnnataattaaatatctaatatctatttgttgttttttgcaatgcttaa-tttttagg |
903 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27190592 |
tatcattactgtattgaaat---tgatgtcgacatttttttttttataattaaatatctaatatctatttgttgttttttgcaatgcttaattttttagg |
27190688 |
T |
|
| Q |
904 |
tatggtgtg-aaaaggaggatgaggtcttt-aagcaga-ctttgtgatatatatagacagtgagtgacaa |
970 |
Q |
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||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |
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| T |
27190689 |
tatggtgtgaaaaaggaggatgaggtctttaaagcagagctttgtgatatatatagagagtgagtgacaa |
27190758 |
T |
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