View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345-Insertion-11 (Length: 307)
Name: NF5345-Insertion-11
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-11 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 47052163 - 47052464
Alignment:
| Q |
6 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgatgattgtgccctgaaagttcttgataaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47052163 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgataattgtgccctgaaagttcttgataaa |
47052262 |
T |
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| Q |
106 |
ctgatcaactctctctacaaaaacacccgcactcttatacaaattgacttgtttatcctccgtatcagaagcattaacgagatagccggattgtagcaga |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47052263 |
ctgatcaactctctctacaaaaacacccgcacacttatccaaattgacttgtttatcctccgtatcagaagcattaacgagatagccggattgtagcaga |
47052362 |
T |
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| Q |
206 |
tcgtgttcagtggtcccaagcatgaagatgtcaaagaatagatctctccttacagcccaaagcttacaccaccttctagaaagtatactggttttcaaca |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47052363 |
tcgtgttcagtggttccaagcatgaagatgtcaaagaatagatctctccttacagcccaaagcttacaccaccttctagaaagtatactggttttcaaca |
47052462 |
T |
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| Q |
306 |
aa |
307 |
Q |
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|| |
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| T |
47052463 |
aa |
47052464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 48108568 - 48108691
Alignment:
| Q |
184 |
gagatagccggattgtagcagatcgtgttcagtggtcccaagcatgaagatgtcaaagaatagatctctccttacagcccaaagcttacaccaccttcta |
283 |
Q |
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|||||| ||||||||||||||||||| ||| || | |||||||||||||| || |||||||||||| |||||| ||||||||| || |||||||||||| |
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| T |
48108568 |
gagatacccggattgtagcagatcgtcctcattgcttccaagcatgaagatatcgaagaatagatctttccttagagcccaaagattgcaccaccttcta |
48108667 |
T |
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| Q |
284 |
gaaagtatactggttttcaacaaa |
307 |
Q |
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|| |||||||| ||||| |||||| |
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| T |
48108668 |
gatagtatactagttttaaacaaa |
48108691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 47927025 - 47926915
Alignment:
| Q |
6 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgatgattgtgccctgaaagttcttgataaa |
105 |
Q |
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||||||||| |||||||||||| ||| ||| |||||||||| |||||||||| | || |||||||||| ||| | |||||| |||| ||||||| ||| |
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| T |
47927025 |
caaaacttatccattgatcaattgtgttgctttgttcacaatttaaatagaagctcactaggaaagaattgatcactgtgccaggaaaattcttgacaaa |
47926926 |
T |
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| Q |
106 |
ctgatcaactc |
116 |
Q |
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||||| |||| |
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| T |
47926925 |
ttgatctactc |
47926915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 48108384 - 48108486
Alignment:
| Q |
6 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgatgattgtgccctgaaagttcttgataaa |
105 |
Q |
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||||||||| ||||||||||||||||| | | |||| || || || ||||||||| || |||||||||||||| |||| || ||||| || |||| ||| |
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| T |
48108384 |
caaaacttatccattgatcaataatgttgttgtgtttactatttatatagaagttcacaaggaaagaatcgatctttgttccttgaaattttttgacaaa |
48108483 |
T |
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| Q |
106 |
ctg |
108 |
Q |
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||| |
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| T |
48108484 |
ctg |
48108486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 50458564 - 50458495
Alignment:
| Q |
236 |
tcaaagaatagatctctccttacagcccaaagcttacaccaccttctagaaagtatactggttttcaaca |
305 |
Q |
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|||||| | ||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
50458564 |
tcaaagtagagatctctccttaaagcccatagcttgcaccaccttctagacagtatactggttttcaaca |
50458495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 50458800 - 50458700
Alignment:
| Q |
6 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgatgattgtgccctgaaagttcttgataaa |
105 |
Q |
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||||||||| ||||||||||||| ||| || ||||||||||||||||| || || || | ||||||||| || ||||||| | ||| ||||||| ||| |
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| T |
50458800 |
caaaacttatccattgatcaatattgttactttgttcacaatctaaataaaaattcactacgaaagaatcaatatttgtgccttcaaaattcttgacaaa |
50458701 |
T |
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| Q |
106 |
c |
106 |
Q |
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| T |
50458700 |
c |
50458700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 39411331 - 39411263
Alignment:
| Q |
6 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaat |
74 |
Q |
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||||||||| ||||||||||||| ||| ||| |||||||||| |||||||||||| || |||||||||| |
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| T |
39411331 |
caaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcactaggaaagaat |
39411263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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