View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345-Insertion-2 (Length: 985)
Name: NF5345-Insertion-2
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-2 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 626 - 985
Target Start/End: Original strand, 37160706 - 37161066
Alignment:
| Q |
626 |
taaggcacttttttagttgattttaatagtttagagattaaattaacgagagaatgatagtttagggaataaataaattgnnnnnnnnnnnn-ccaaaca |
724 |
Q |
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| T |
37160706 |
taagggacttttttagttgattttaatagtttagagactaaattaacgagagaatgatagtttaggtaataaataaattgtttttgtttttttccaaacg |
37160805 |
T |
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| Q |
725 |
agaaaactagtttttaaactactctctttgatccttttacaagaggcaaacatgtcaacaaaagttgatgtattagatcaaagactgaccaagtagaatg |
824 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
37160806 |
agaaaactagtttttaaactactctctttgatccttttacaagaggcaaacatgtcaacaaaagttgatgtattagattaaagactgaccaaatagaatg |
37160905 |
T |
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| Q |
825 |
aaactggggttgtcgccacccttgtgcaaggtgctcctatgcgtaccttttgttttgaaacaccctccctacttttgtaaaaactttgggttgtcacaac |
924 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37160906 |
aaactggggttgtcgccacccttgtgcaaggtgctcctatgcgtaccttttgtttttaaacaccctccctacttttttaaaaactttgggttgtcacaac |
37161005 |
T |
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| Q |
925 |
ttttaattcattcaaattaaagctatcacaacttttaattcatctaaattcccttcataca |
985 |
Q |
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| T |
37161006 |
ttttaattcattcaaattaaagctatcgcaacttttaattcatctaaattcccttcataca |
37161066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 234 - 471
Target Start/End: Original strand, 37160473 - 37160710
Alignment:
| Q |
234 |
ctactctcttaagtagccattcctcaaagcatcagcttcaagaatggaagggaggccaatagggcgttcatgccaaaggtaaaacttatcgttgcccgaa |
333 |
Q |
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| T |
37160473 |
ctactctcttaagtagccattcctcaaagcatcagcttcaagaatggaagggaggccaatagggcgttcatgccaaaggtaaaacttatcgttgctcgaa |
37160572 |
T |
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| Q |
334 |
gattccatcttagcaagaaggtttgcaccttgattaccttctctttaaggtgcgaattaactgcacattccagtcaagcttcaatatatctttgatatat |
433 |
Q |
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| T |
37160573 |
gatcccatcttagcaagaaggtctgcaccttgattaccttctctttaaggtgcgaatgaactgcacattccagtcaagcttcaatatatctttgatatat |
37160672 |
T |
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| Q |
434 |
aagatctccactgcataacaatggaaatgaatataagg |
471 |
Q |
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| T |
37160673 |
aagatctccaccgcataacaatggaaatgaatataagg |
37160710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 37160246 - 37160435
Alignment:
| Q |
7 |
acaatttaccgttgcatcaaggctccgctcattgtaatacatgatctataagtacaagtatcttaaatcccaataacacacataagagcaacttaaacgc |
106 |
Q |
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| T |
37160246 |
acaatttaccgttgcatcaaggctccgctcattgtaatacatgatctataagtacaagtatcttaaatcccaataacacacataagagcaacttaaacgc |
37160345 |
T |
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| Q |
107 |
tagttggttgatgtataaatttcttataatgtgcgtgaactatagtttaccaccgttgcagtaaagttgatcttgaaagtggggtttttt |
196 |
Q |
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| T |
37160346 |
tagttggttgatgtataaatttcttataatgtgcgtgaactatagtttaccaccattgcagtaaagttgatcttgaaagtggggtttttt |
37160435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 693
Target Start/End: Original strand, 38504120 - 38504177
Alignment:
| Q |
636 |
ttttagttgattttaatagtttagagattaaattaacgagagaatgatagtttaggga |
693 |
Q |
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| T |
38504120 |
ttttagttgattttaatagtttagggattaacttgataaaagaatgatagtttaggga |
38504177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Original strand, 421787 - 421842
Alignment:
| Q |
638 |
ttagttgattttaatagtttagagattaaattaacgagagaatgatagtttaggga |
693 |
Q |
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| T |
421787 |
ttagttgattttaatagtttagggactaaattggtgagagagtgatagtttaggga |
421842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 299 - 467
Target Start/End: Complemental strand, 28836739 - 28836573
Alignment:
| Q |
299 |
gttcatgccaaaggtaaaacttatcgttgcccgaagattccatcttagcaagaaggtttgcaccttgattaccttctctttaaggtgcgaattaactgca |
398 |
Q |
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| T |
28836739 |
gttcatgccaaaggtaaaacttatccccgctgaaagaactcaacgtagtaagaatgtatgcaccttgattaccttct--ttaaggtgtgagttaaccaca |
28836642 |
T |
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| Q |
399 |
cattccagtcaagcttcaatatatctttgatatataagatctccactgcataacaatggaaatgaatat |
467 |
Q |
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| T |
28836641 |
catttcagtcaagcttcaataaatcttggatagataagatctccaccgcataagagtggaaatgaatat |
28836573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 486 - 561
Target Start/End: Complemental strand, 28836495 - 28836420
Alignment:
| Q |
486 |
agctttaaaacatgaagaattgcagctagctcagcacaagtattgttggaatcaccaagatagccactaaactcat |
561 |
Q |
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| T |
28836495 |
agctttaagccatgaagaattgcagctagctcggcatgagtattgttggaatcaccaagacaaccactaaactcat |
28836420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 669
Target Start/End: Original strand, 1338304 - 1338337
Alignment:
| Q |
636 |
ttttagttgattttaatagtttagagattaaatt |
669 |
Q |
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| T |
1338304 |
ttttagttgattttaatagtttagggattaaatt |
1338337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 636 - 670
Target Start/End: Complemental strand, 20228704 - 20228670
Alignment:
| Q |
636 |
ttttagttgattttaatagtttagagattaaatta |
670 |
Q |
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| T |
20228704 |
ttttagttgattttaatagtttagagattaaatta |
20228670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 52017700 - 52017640
Alignment:
| Q |
639 |
tagttgattttaatagtttagagattaaattaacgagagaatgatagtttagggaataaat |
699 |
Q |
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| T |
52017700 |
tagttgattttaatagtttagggactaatttgttgagagaatgatagtttagggactaaat |
52017640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 634 - 671
Target Start/End: Complemental strand, 14462957 - 14462920
Alignment:
| Q |
634 |
ttttttagttgattttaatagtttagagattaaattaa |
671 |
Q |
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| T |
14462957 |
ttttttagttgattttaataatttagagagtaaattaa |
14462920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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