View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5345-Insertion-3 (Length: 919)
Name: NF5345-Insertion-3
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 723; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 7 - 826
Target Start/End: Original strand, 41708556 - 41709375
Alignment:
| Q |
7 |
agtattaggctccatagtgtcattgtcaatctcatattcactctcttcatctctgattccaaagttagtaatcaaaggaataccaagagcctcaatattc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41708556 |
agtattaggctccatagtgtcattgtcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattc |
41708655 |
T |
|
| Q |
107 |
ttcttcattgatttctccaacaactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaacgttctcagttcacaaactt |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41708656 |
ttcttcattgatttctccaataactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaactt |
41708755 |
T |
|
| Q |
207 |
ctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41708756 |
ctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattatt |
41708855 |
T |
|
| Q |
307 |
ttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcgnnnnnnnctccatttcaaccttctcttgaaga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
41708856 |
ttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctcgtttttttctccatttcaaccttctcttgaaga |
41708955 |
T |
|
| Q |
407 |
tctataatctcattttctagtctcttatatctactcactaaaatcccttcaattctatcaaattcttctgtcagaaatgttgttcgcaacaccgacacca |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
41708956 |
tctataatctcattttctagtctcttatatctactcactaaaacctcttcaattctatcaaactgttctgtcagaaatgttgttcgcaacaccaacacca |
41709055 |
T |
|
| Q |
507 |
gttcctgaacgtccatgccttccaagttcatatggtcactcatactttagctgaaaatggtgggaatgaatataaggaagttaagctagctagagaacaa |
606 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
41709056 |
gttcctgaatgttcatgccttccaagttcatatggtcactcatactttagcggaaaatggtgggaatgaatataaggaagttaaggtagatagagaacaa |
41709155 |
T |
|
| Q |
607 |
ccacacagaatgtattgtgctgtatttgtttacagtacataaaactaatatatataaataaaaggacttggtgcctcaatgccttgcacaaaagctataa |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41709156 |
ccacacagaatgtattgtgctgtatttgtttacagtacataaaactaatatatataaataaaaggacttggtgcctcaatgccttgcacaaaagctataa |
41709255 |
T |
|
| Q |
707 |
acataaaataaagatttagttggtgtctcaatgccttgaataaaagctataaacaagatataaatacatgtacctcaaccgataaaaatattaaaatggt |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41709256 |
acataaaataaagatttagttggtgtctcaatgccttgaataaaagctataaacaagatataaatacatgtacctcaaccaataaaaatattaaaatggt |
41709355 |
T |
|
| Q |
807 |
taggccagatgtcatgatcg |
826 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
41709356 |
taggcctaatgtcatgatcg |
41709375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 533
Target Start/End: Original strand, 41717628 - 41718154
Alignment:
| Q |
7 |
agtattaggctccatagtgtcattgtcaatctcatattcactctcttcatctctgattccaaagttagtaatcaaaggaataccaagagcctcaatattc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41717628 |
agtattaggctccatagtgtcattgtcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattc |
41717727 |
T |
|
| Q |
107 |
ttcttcattgatttctccaacaactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaacgttctcagttcacaaactt |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41717728 |
ttcttcattgatttctccaataactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaactt |
41717827 |
T |
|
| Q |
207 |
ctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41717828 |
ctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattatt |
41717927 |
T |
|
| Q |
307 |
ttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcgnnnnnnnctccatttcaaccttctcttgaaga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
41717928 |
ttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaaccttgtttttttctccatttcaaccttctcttgaaga |
41718027 |
T |
|
| Q |
407 |
tctataatctcattttctagtctcttatatctactcactaaaatcccttcaattctatcaaattcttctgtcagaaatgttgttcgcaacaccgacacca |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41718028 |
tctataatctcattttctagtctcttatatctactcactaaaatcccttcaattctatcaaattcttctgtcagaaatgctgttcgcaacaccgacacca |
41718127 |
T |
|
| Q |
507 |
gttcctgaacgtccatgccttccaagt |
533 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
41718128 |
gttcctgaacgttcatgccttccaagt |
41718154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 179 - 450
Target Start/End: Original strand, 41686347 - 41686621
Alignment:
| Q |
179 |
tccttcaacgttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgtttt---ct |
275 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||| | || | ||||| || |
|
|
| T |
41686347 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
41686446 |
T |
|
| Q |
276 |
taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcgn |
375 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
41686447 |
taacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcgt |
41686546 |
T |
|
| Q |
376 |
nnnnnnctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaat |
450 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||| ||| || ||| |||| |||||||||| |||||| |
|
|
| T |
41686547 |
tagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctactcattaaaat |
41686621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 158 - 544
Target Start/End: Original strand, 41659334 - 41659720
Alignment:
| Q |
158 |
ttgctatcattcacccatttctccttcaacgttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
257 |
Q |
| |
|
|||||||||| |||||| || ||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||| || |||| ||||| || |
|
|
| T |
41659334 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctcctt |
41659433 |
T |
|
| Q |
258 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttc |
357 |
Q |
| |
|
|| |||| | |||||||||||||||| ||| || ||||||||||| | ||||| ||||| ||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
41659434 |
caactaaactagttttcttaacttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttc |
41659533 |
T |
|
| Q |
358 |
ctcggcttcaaacctcgnnnnnnnctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaatcccttca |
457 |
Q |
| |
|
|| |||| ||||||| ||||| |||| ||||||||||| || || |||||| | | |||||||| ||||||||||||||||| | |||| |
|
|
| T |
41659534 |
ttcagcttgaaacctcatcagtctctccaagtcaaacttctcttgaaaatgtagaatctctgtgtgtagtctctcatatctactcactaaaaccttttca |
41659633 |
T |
|
| Q |
458 |
attctatcaaattcttctgtcagaaatgttgttcgcaacaccgacaccagttcctgaacgtccatgccttccaagttcatatggtca |
544 |
Q |
| |
|
| | |||||| | ||||||| |||| | ||| ||| ||||||| || |||||||||| | |||| |||||||||| |||||||| |
|
|
| T |
41659634 |
agttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtcttccaagtttctatggtca |
41659720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 158 - 547
Target Start/End: Complemental strand, 41688006 - 41687614
Alignment:
| Q |
158 |
ttgctatcattcacccatttctccttcaacgttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
257 |
Q |
| |
|
|||||||||| |||||||| || |||||| ||||||| ||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| ||||| | | |
|
|
| T |
41688006 |
ttgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctct |
41687907 |
T |
|
| Q |
258 |
cagctaagtttgttttct---taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatc |
354 |
Q |
| |
|
|| || | ||||| | | ||||||||||| || ||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||| ||| |
|
|
| T |
41687906 |
caatcaaactagttttttgtttgacttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatc |
41687807 |
T |
|
| Q |
355 |
ttcctcggcttcaaacctcgnnnnnnnctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaatccct |
454 |
Q |
| |
|
|||||| ||| |||||| | |||||||||| |||||||||||||| || ||| | ||| ||| |||||| |||| ||||||||| | || |
|
|
| T |
41687806 |
ttcctcaacttgaaaccttgttagtttttccatttcaaacttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctct |
41687707 |
T |
|
| Q |
455 |
tcaattctatcaaattcttctgtcagaaatgttgttcgcaacaccgacaccagttcctgaacgtccatgccttccaagttcatatggtcactc |
547 |
Q |
| |
|
|||| ||||||| |||||||| ||||| | ||| || ||||| || |||||||| |||| | |||| ||||||| || ||||||||||| |
|
|
| T |
41687706 |
tcaacattatcaaagtcttctgttagaaacgatgtgcgtaacacagaaaccagttcatgaatgctcatgtcttccaaatttctatggtcactc |
41687614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 829 - 889
Target Start/End: Original strand, 41709651 - 41709711
Alignment:
| Q |
829 |
aactccaacacctcaacttatgtgtgtgagtttcaatagctatttgtcatttcgtctacct |
889 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41709651 |
aactccaacacctccacttatatgtgtgagtttcaatagctatttgtcatttcgtctacct |
41709711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 14682517 - 14682426
Alignment:
| Q |
269 |
gttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctc |
360 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||||| |||||||| | ||||||| |||||| || || ||||| |||||||| |
|
|
| T |
14682517 |
gttttcttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctc |
14682426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 14682687 - 14682624
Alignment:
| Q |
93 |
gagcctcaatattcttcttcattgatttctccaacaactcactttttctcaccccatatgcattttt |
159 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |
|
|
| T |
14682687 |
gagcctcacaattcttcttcattgatttctc---caactcactatttttcaccccaaatgcattttt |
14682624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 365
Target Start/End: Complemental strand, 14691033 - 14690869
Alignment:
| Q |
201 |
aaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcata |
300 |
Q |
| |
|
||||||| |||||||||||||| || ||| || |||||| | ||||| ||| ||||| |||| | ||||||||| |||| |||| | |||||||| |
|
|
| T |
14691033 |
aaacttccaactccaattcattattattcatttttagctcaacgatgctttctctttcacctaaactatttttcttaatttccatcaacgatttttcata |
14690934 |
T |
|
| Q |
301 |
attattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggctt |
365 |
Q |
| |
|
|||||| ||||| |||| || | |||||||||||||| || || ||||||||||||| |||| |
|
|
| T |
14690933 |
attattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagctt |
14690869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 433 - 483
Target Start/End: Complemental strand, 14682377 - 14682327
Alignment:
| Q |
433 |
atatctactcactaaaatcccttcaattctatcaaattcttctgtcagaaa |
483 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
14682377 |
atatctactcactaaaatttcttcaacactatcaaattgttctgtcagaaa |
14682327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 846 - 886
Target Start/End: Complemental strand, 37854676 - 37854636
Alignment:
| Q |
846 |
ttatgtgtgtgagtttcaatagctatttgtcatttcgtcta |
886 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
37854676 |
ttatgtgtttgagtttcaatagctatttctcatttcgtcta |
37854636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 2439189 - 2439118
Alignment:
| Q |
163 |
atcattcacccatttctccttcaacgttctcagttcacaaacttctaactccaattcattgttcttctttct |
234 |
Q |
| |
|
||||| ||||||||| ||| |||| ||||||| |||||| | || |||||||||| ||||||||||||||| |
|
|
| T |
2439189 |
atcatccacccatttttccaccaactttctcagctcacaagcatccaactccaatttattgttcttctttct |
2439118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University