View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5345-Insertion-4 (Length: 725)

Name: NF5345-Insertion-4
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5345-Insertion-4
NF5345-Insertion-4
[»] chr2 (5 HSPs)
chr2 (291-725)||(17455862-17456296)
chr2 (8-257)||(17455559-17455808)
chr2 (8-135)||(17461338-17461465)
chr2 (346-480)||(17805267-17805401)
chr2 (598-627)||(8362402-8362431)
[»] chr1 (4 HSPs)
chr1 (333-455)||(775356-775479)
chr1 (49-147)||(774866-774964)
chr1 (145-194)||(775196-775245)
chr1 (570-624)||(49982460-49982514)
[»] chr4 (7 HSPs)
chr4 (336-480)||(52142584-52142729)
chr4 (8-113)||(52142793-52142898)
chr4 (515-573)||(6807069-6807127)
chr4 (598-627)||(9579665-9579694)
chr4 (598-627)||(9585360-9585389)
chr4 (598-627)||(18051775-18051804)
chr4 (533-574)||(19627871-19627912)
[»] chr7 (2 HSPs)
chr7 (584-624)||(8159642-8159682)
chr7 (570-623)||(27800033-27800086)
[»] scaffold0009 (1 HSPs)
scaffold0009 (578-624)||(214496-214542)
[»] chr8 (1 HSPs)
chr8 (570-623)||(12801454-12801507)
[»] chr5 (1 HSPs)
chr5 (598-627)||(19189484-19189513)
[»] chr3 (2 HSPs)
chr3 (598-627)||(4393523-4393552)
chr3 (598-627)||(24105151-24105180)


Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 291 - 725
Target Start/End: Original strand, 17455862 - 17456296
Alignment:
Q  291 ctgttatgaactgaaaaagggaatgaagtatgcgcgtggtcattgattacctgtagaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455862 ctgttatgaactgaaaaagggaatgaagtatgcgcgtggtcattgattacctgtagaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaa 17455961  T
Q  391 acattaacaatgaggaggtatagaagctgccacagaatgtaagccgctaagggtaccagaaacatccatgtccaaatataggatttatctgctaagagtt 490  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455962 acattaacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatctgctaagagtt 17456061  T
Q  491 gtttataagggtattcttgcaacgtttttcctcgtgcgatggtgttttctaaaatataagtattgacaagcaactaattatttatatagcaagagtaccg 590  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  17456062 gtttataagggtactcttgcaacgttttttctcgtgcgatggtgttttctaaaatataagtattgacaaacaactaactatttatatagcaagagtaccg 17456161  T
Q  591 gcgcagttcaatttatgaggtgtaccgtagaagtcccgtatatttttgttatgtgaatgtgcatatattaatggtcgaaccacccacttattgcccataa 690  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456162 gtgcagttcaatttatgaggtgtaccgtagaagtcccatatatttttgttatgtgaatgtgcatatattaatggtcgaaccacccacttattgcccataa 17456261  T
Q  691 taacagtgcaaagaaaaacaacacaagtagactga 725  Q
    |||||||||||||||||||||||||||||||||||    
T  17456262 taacagtgcaaagaaaaacaacacaagtagactga 17456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 17455559 - 17455808
Alignment:
Q  8 gtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  17455559 gtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacatt 17455658  T
Q  108 gaagtcgaaaatgtgaaagaaaagtgaagtgcataaactagtggtcaaagatacagacattaaagttacccaagtcagtttgtttatttatatacaagtc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  17455659 gaagtcgaaaatgtgaaagaaaagtgaagtgcataaactagtggtcaaagatacagacattaaagttaccttagtcagtttgtttatttatatacaagtc 17455758  T
Q  208 atttttatggtgagtataaagacaaataatatagtacctatctcgactct 257  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17455759 atttttacggtgagtataaagacaaataatatagtacctatctcgactct 17455808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 17461465 - 17461338
Alignment:
Q  8 gtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||||  ||    
T  17461465 gtacatcagcaagcgattttgatccccaagcaacccacttaagcgccaccatacattgtttgctttcttagctttttttgagagttccctgtaaaaggtt 17461366  T
Q  108 gaagtcgaaaatgtgaaagaaaagtgaa 135  Q
    ||| || | |||||||||||||||||||    
T  17461365 gaaatcaacaatgtgaaagaaaagtgaa 17461338  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 346 - 480
Target Start/End: Original strand, 17805267 - 17805401
Alignment:
Q  346 gaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagccgctaagggta 445  Q
    |||||||||| ||| ||||||||||||| |||||||||||  || ||||| |||||||||  |||||||| ||||||||   ||||| |  ||||||| |    
T  17805267 gaagtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaactactaagggaa 17805366  T
Q  446 ccagaaacatccatgtccaaatataggatttatct 480  Q
    ||||||||| |||||| || | |||||||||||||    
T  17805367 ccagaaacagccatgtacatagataggatttatct 17805401  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Complemental strand, 8362431 - 8362402
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  8362431 tcaatttatgaggtgtaccgtagaagtccc 8362402  T

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Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 333 - 455
Target Start/End: Original strand, 775356 - 775479
Alignment:
Q  333 ttgattacctgtag-aagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgta 431  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  775356 ttgattacctataggaagtcatgacttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgta 775455  T
Q  432 agccgctaagggtaccagaaacat 455  Q
    ||| ||||||||||||||||||||    
T  775456 agctgctaagggtaccagaaacat 775479  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 774866 - 774964
Alignment:
Q  49 agtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaacta 147  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
T  774866 agtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaacta 774964  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 775196 - 775245
Alignment:
Q  145 ctagtggtcaaagatacagacattaaagttacccaagtcagtttgtttat 194  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| ||||    
T  775196 ctagtggtcaaagatacaaacattaaagttacaaaagtcagtttgattat 775245  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 624
Target Start/End: Complemental strand, 49982514 - 49982460
Alignment:
Q  570 atttatatagcaagagtaccggcgcagttcaatttatgaggtgtaccgtagaagt 624  Q
    |||||||||||| ||||| |||  ||  |||||||||||||||||||||||||||    
T  49982514 atttatatagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagt 49982460  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 336 - 480
Target Start/End: Complemental strand, 52142729 - 52142584
Alignment:
Q  336 attacctgtagaa-gtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagc 434  Q
    ||||||||||| | ||||||| |||||||||||||||||||| ||||||||  || ||||| |||||||||| |||||||| ||||||||||||||||||    
T  52142729 attacctgtaggatgtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagc 52142630  T
Q  435 cgctaagggtaccagaaacatccatgtccaaatataggatttatct 480  Q
      ||||||| |||||||||| ||||||||||| |||||||||||||    
T  52142629 tactaagggaaccagaaacagccatgtccaaagataggatttatct 52142584  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 52142898 - 52142793
Alignment:
Q  8 gtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacatt 107  Q
    |||||| |||| |||||||||||||||||  | |||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||  ||| |||    
T  52142898 gtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttgctttcttagctttttttgagagttccctgtgaaagatt 52142799  T
Q  108 gaagtc 113  Q
    ||||||    
T  52142798 gaagtc 52142793  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 6807127 - 6807069
Alignment:
Q  515 tttttcctcgtgcgatggtgttttctaaaatataagtattgacaagcaactaattattt 573  Q
    ||||||||| || ||||||||||||||||||||||  ||||||||  ||||| ||||||    
T  6807127 tttttcctcatgagatggtgttttctaaaatataaacattgacaaataactacttattt 6807069  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Complemental strand, 9579694 - 9579665
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  9579694 tcaatttatgaggtgtaccgtagaagtccc 9579665  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Complemental strand, 9585389 - 9585360
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  9585389 tcaatttatgaggtgtaccgtagaagtccc 9585360  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Complemental strand, 18051804 - 18051775
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  18051804 tcaatttatgaggtgtaccgtagaagtccc 18051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 574
Target Start/End: Original strand, 19627871 - 19627912
Alignment:
Q  533 tgttttctaaaatataagtattgacaagcaactaattattta 574  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  19627871 tgttttctaaaatataaatattgacaaataactaattattta 19627912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 624
Target Start/End: Complemental strand, 8159682 - 8159642
Alignment:
Q  584 agtaccggcgcagttcaatttatgaggtgtaccgtagaagt 624  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  8159682 agtaccggcacacttcaatttatgaggtgtaccgtagaagt 8159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 623
Target Start/End: Complemental strand, 27800086 - 27800033
Alignment:
Q  570 atttatatagcaagagtaccggcgcagttcaatttatgaggtgtaccgtagaag 623  Q
    ||||||| ||| ||||||||||  ||  ||||||||||||||||||||||||||    
T  27800086 atttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgtagaag 27800033  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 624
Target Start/End: Original strand, 214496 - 214542
Alignment:
Q  578 agcaagagtaccggcgcagttcaatttatgaggtgtaccgtagaagt 624  Q
    |||| |||||||||  || ||||||||||||||||||||||||||||    
T  214496 agcaggagtaccggtacaattcaatttatgaggtgtaccgtagaagt 214542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 623
Target Start/End: Original strand, 12801454 - 12801507
Alignment:
Q  570 atttatatagcaagagtaccggcgcagttcaatttatgaggtgtaccgtagaag 623  Q
    ||||||| ||| ||||||||||  ||  ||||||||||||||||||||||||||    
T  12801454 atttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgtagaag 12801507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Original strand, 19189484 - 19189513
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  19189484 tcaatttatgaggtgtaccgtagaagtccc 19189513  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Original strand, 4393523 - 4393552
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  4393523 tcaatttatgaggtgtaccgtagaagtccc 4393552  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Complemental strand, 24105180 - 24105151
Alignment:
Q  598 tcaatttatgaggtgtaccgtagaagtccc 627  Q
    ||||||||||||||||||||||||||||||    
T  24105180 tcaatttatgaggtgtaccgtagaagtccc 24105151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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