View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345-Insertion-5 (Length: 716)
Name: NF5345-Insertion-5
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-5 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 44702734 - 44703058
Alignment:
| Q |
8 |
tacattacattcatattctctccctttttctttcttatcacaacaatattccatttttcactttctttaccctcatatattctctatatattctaagtgt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44702734 |
tacaatacattcatattctctccctttttctttcttatcacaacaatattccatttttcactttctttaccctcatatattctctatatattctaagtgt |
44702833 |
T |
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| Q |
108 |
ctatgtaggtatggagggtgaaaaatatgccaacataatcatggagtaaggtggaaaaataaagtggcgctcttcaaggaaaagggatgtcatatcnnnn |
207 |
Q |
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| T |
44702834 |
ctatgtaggtatggagggtgaaaaatatgccaacataatcatggagtaaggtggaaaaataaagtggcgctcttcaaggaaaagggatgtcatatctttt |
44702933 |
T |
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| Q |
208 |
nnngttaaggaaaagggttccttattcttgccaaggnnnnnnnggcatcgaatcacttgcaagaaaggaaaggaagataattttttatctattaacctat |
307 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
44702934 |
tttgttaaggaaaagggttgcttattcttgccaaggaaaaaaaggcatcgaatcacttgcaagcaaggaaaggaagataatttttgatctattaacctat |
44703033 |
T |
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| Q |
308 |
tgggggtaagtaaggatcataagag |
332 |
Q |
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| T |
44703034 |
tgggggtaagtaaggatcataagag |
44703058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 343 - 716
Target Start/End: Original strand, 44703244 - 44703623
Alignment:
| Q |
343 |
taaaattgtatcaattatttttcaaaaagtggaaaatcaatttttctcaacaaatacttaatagaatcaatgtgtcataagagaaccatgttggcaggac |
442 |
Q |
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| T |
44703244 |
taaaattctatcaattatttttcaaaaagtggaaaatcaatttttctcaacaaatacttaatagaatcaatgtgtcataagagaaccatgttggcaggac |
44703343 |
T |
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| Q |
443 |
cttttctttataagtctcccattataaaaagtcaatttcttaagaataatttnnnnnnntcgtactaaaacatacttaaaagagttcatattttaatggt |
542 |
Q |
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| T |
44703344 |
cttttctttataagtctcccattataaaaagtcaatttcttaagaataatttaaaaaaatcgtactaaaacatacttaaaagagttcatattttaatggt |
44703443 |
T |
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| Q |
543 |
ttaaacac--nnnnnnnnnactcttatcattatttt-gggttcatattggtcccttattt---gnnnnnnnnnttatgcaaataagtcatttaatttgtt |
636 |
Q |
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| T |
44703444 |
ttaaacactttttttttttactcttatcattattttggggttcatattggtcccttatttaaaaaaaataataatatgcaaataagtcatttaatttgtt |
44703543 |
T |
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| Q |
637 |
taatcggtaccattttagtccttttcatccatcaaaggctaataaaaatagggttaattggaactcattttttccgaaat |
716 |
Q |
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| T |
44703544 |
taatcagtaccattttagtcattttcatccatcaaaggctaataaaaatagggttaattggaactcattttttccgaaat |
44703623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 678
Target Start/End: Original strand, 85155 - 85207
Alignment:
| Q |
626 |
tttaatttgtttaatcggtaccattttagtccttttcatccatcaaaggctaa |
678 |
Q |
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| T |
85155 |
tttaatttgtttaattggtaccatattaatcattttcatccatcaaagactaa |
85207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 678
Target Start/End: Original strand, 12313948 - 12314000
Alignment:
| Q |
626 |
tttaatttgtttaatcggtaccattttagtccttttcatccatcaaaggctaa |
678 |
Q |
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| T |
12313948 |
tttaatttgtttaattggtattatattagtcattttcatccatcaaaggctaa |
12314000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 599
Target Start/End: Original strand, 3188433 - 3188471
Alignment:
| Q |
561 |
ctcttatcattattttgggttcatattggtcccttattt |
599 |
Q |
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| T |
3188433 |
ctcttatctttattttgggttcatattggtcacttattt |
3188471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 599
Target Start/End: Original strand, 3197250 - 3197288
Alignment:
| Q |
561 |
ctcttatcattattttgggttcatattggtcccttattt |
599 |
Q |
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| T |
3197250 |
ctcttatctttattttgggttcatattggtcacttattt |
3197288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 599
Target Start/End: Original strand, 3206068 - 3206106
Alignment:
| Q |
561 |
ctcttatcattattttgggttcatattggtcccttattt |
599 |
Q |
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| T |
3206068 |
ctcttatctttattttgggttcatattggtcacttattt |
3206106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 678
Target Start/End: Complemental strand, 29529620 - 29529555
Alignment:
| Q |
613 |
tgcaaataagtcatttaatttgtttaatcggtaccattttagtccttttcatccatcaaaggctaa |
678 |
Q |
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| T |
29529620 |
tgcaaataggtcctttaatttgtttcattggtaccgcattagtcattttcatccatcaaagactaa |
29529555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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