View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5345-Insertion-6 (Length: 530)

Name: NF5345-Insertion-6
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5345-Insertion-6
NF5345-Insertion-6
[»] chr3 (1 HSPs)
chr3 (6-530)||(45449690-45450217)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 530
Target Start/End: Original strand, 45449690 - 45450217
Alignment:
Q  6 caagataacctataagcacaacaacaagacatcactcccaaagcttattttgttttgnnnnnnnnnnnnnnnnnnnnnngcacaacttcgcggtatgaat 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                      |||| ||||||| ||||||||    
T  45449690 caagagaacctataagcacaacaacaagacatcactcccaaagcttattttgttttgataaaatataaaaaataaataagcaccacttcgccgtatgaat 45449789  T
Q  106 gacacaccttaatctttcaatcaaattctagaagatgattacttttctacaccaatcttcaacctgtgcactcaattgacccttcttctaaatactcata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45449790 gacacaccttaatctttcaatcaaattctagaagatgattacttttctacaccaatcttcaacctgtgcactcaattgacccttcttctaaatactcata 45449889  T
Q  206 ataggatggatttagtctatacaaagttcaacaactctgaaatctcgactataagccaactgaagaccaggtatcttttttgaatatatctatacctaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45449890 ataggatggatttagtctatacaaagttcaacaactctgaaatctcgactataagccaactgaagaccaagtatcttttttgaatatatctatacctaaa 45449989  T
Q  306 tgattttctctatttattttcataaatggagatatcccaactcgtccaagtatattactaatttgattatttcctac---nnnnnnnnnnnnnnnnntct 402  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||                    |||    
T  45449990 tgattttctctatttatgttcataaatggagatatcctaactcgtccaagtatattactaatttgattatttcctacaaaaaaaatataaaaaaaattct 45450089  T
Q  403 ccaacacataattgatcaacccagtccatggtcaagtgaatctaaaaggctagatatttatcccatgctggaaaaatggaaattaaggaagatcttttct 502  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45450090 ccaacacataattgatcaacccagtccatggtcatgtgaatctagaaggctagatatttatcccatgctggaaaaatggaaattacggaagatcttttct 45450189  T
Q  503 aaaataatagaactacagtacacggcat 530  Q
    ||||||||||||||||||||||||||||    
T  45450190 aaaataatagaactacagtacacggcat 45450217  T

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