View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345-Insertion-7 (Length: 526)
Name: NF5345-Insertion-7
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 49517377 - 49516859
Alignment:
| Q |
8 |
atatttacagacatagattactgaaggattgattatatttccaatgcaaaaagaaattgcattgaatgataaaacaatgacaaaaggtatgttgcgcaca |
107 |
Q |
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| T |
49517377 |
atatttacagacatagatcactgaaggattgattatatttccaacgcaaaaaaaaattgcattgaatgataaaacaacgacaaaaggtatgttgcacaca |
49517278 |
T |
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| Q |
108 |
aggtaagctggttcaggggatattgagcctaattttgaaatttatccattaaattggagaaacgagggcgtaagatgtttctgaaggcttcccctagtaa |
207 |
Q |
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| T |
49517277 |
aggtaagctggttcaggggatattgagcctaattttgaaatttatctattaaattggagaaacgagggcgtaagatgtttctgaaggcttcccctagtaa |
49517178 |
T |
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| Q |
208 |
agcacaagcttttctgtgaagtgtgaaccatgactaagggaaggccttgcaagattaaggaaagaggtattattcagaatacaagcagctgctagtggaa |
307 |
Q |
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| T |
49517177 |
agcacaagcttttctgtgaagtgtgaaccatgactaagggaaggccttgcaagattaaggtaagaggtattatttagaatacaagcagctgctagtggaa |
49517078 |
T |
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| Q |
308 |
tggaatgaacaatgacttttgtttaatccaagattcttgtagttacttttcacaattgtggaccttattatgtttaacataatctattggcggatgctgc |
407 |
Q |
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| T |
49517077 |
tggaatgaacaatgacttttgtttaatccaatactcttgtagttacttttcacaattgtggaccttattatgtttaacataatctattggtggatgctgc |
49516978 |
T |
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| Q |
408 |
tccagcaaggatgcaacaacataattcctataggtaacaagtatagtataatgaccattgaactgactccatcttgaagatttaccccaaggttaagcat |
507 |
Q |
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| T |
49516977 |
tccagcaaggatgcaacaacataattcctataggtaaaaagtatagtataatgaccattgaactgactccatcttgaagatttaccccaaggttaagcat |
49516878 |
T |
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| Q |
508 |
actattcacacaagtggtc |
526 |
Q |
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| T |
49516877 |
actattcacacaagtggtc |
49516859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 49515509 - 49515584
Alignment:
| Q |
399 |
ggatgctgctccagcaaggatgcaacaacataattcctataggtaacaagtatagtataatgaccattgaactgac |
474 |
Q |
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| T |
49515509 |
ggatgctgctccgacaagtatgcaacaacataattcatataagcaacaagtataatataatgaccatcaaactgac |
49515584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 27746603 - 27746553
Alignment:
| Q |
230 |
gtgaaccatgactaagggaaggccttgcaagattaaggaaagaggtattat |
280 |
Q |
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| T |
27746603 |
gtgaaccatgattaagggaaggccttgcaagatgaaggaaaggggtattat |
27746553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 22990259 - 22990312
Alignment:
| Q |
412 |
gcaaggatgcaacaacataattcctataggtaacaagtatagtataatgaccat |
465 |
Q |
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| T |
22990259 |
gcaaggatgcatcaacataactcatataggcaacaagtataatataattaccat |
22990312 |
T |
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