View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345-Insertion-8 (Length: 460)
Name: NF5345-Insertion-8
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-84
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 6811575 - 6811342
Alignment:
| Q |
8 |
attgatgataagaatgttcaagatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagcatagactttgaggcggattaatccaaatgta |
107 |
Q |
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| T |
6811575 |
attgatgataagaatgttcaagatggagtaaaagttgaagttgatagtcttgaaattaatgattgtagtatagactttgaggcggattaattcaaatgta |
6811476 |
T |
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| Q |
108 |
tatcattaagaaactaaacacnnnnnnnnnnnnnnnnatgattttttgatataatgtaagtttcttaaatcaacaaagacacawwwwcwttttatgtgat |
207 |
Q |
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| T |
6811475 |
tatcattaagaaactaaacac--atattatatatataatgattttttgatataatgtaagtttgttaaatcaacaaagacacaaaaacattttatgtgat |
6811378 |
T |
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| Q |
208 |
tttctcaactcagaggagattcggattatgtaatac |
243 |
Q |
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| T |
6811377 |
tttctcaactcagaggagattcggattatgtaatac |
6811342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 8e-76
Query Start/End: Original strand, 304 - 460
Target Start/End: Complemental strand, 6811277 - 6811121
Alignment:
| Q |
304 |
gaggatgcgccagaagtcggaggacctcatcaggtgtcgttgagctgcaccttttccatttccgcaacaaacttcagtccaatgcttgtagscaaaagct |
403 |
Q |
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| T |
6811277 |
gaggatgcgccagaagtcggaggacctcatcaagcgtcgttgagctgcaccttttccatttccgcaacaaacttcagtccaatgcttgtagccaaaagct |
6811178 |
T |
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| Q |
404 |
tctctgtgagcttgatttaactacacttttttctgtttgatcttctctatatggttt |
460 |
Q |
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| T |
6811177 |
tctctgtgagcttgatttaactacacttttttctgtttgatcttctctgtatggttt |
6811121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 18207488 - 18207429
Alignment:
| Q |
18 |
agaatgttcaagatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagca |
77 |
Q |
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| T |
18207488 |
agaaggttcaagatggagtaaaggttgtagttgatagtcttggaattgatgattgaagca |
18207429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 41060985 - 41060867
Alignment:
| Q |
9 |
ttgatgataagaatgttcaagatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagcatagactttgaggcggattaatccaaatgtat |
108 |
Q |
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| T |
41060985 |
ttgatcataagaaagttgaagatagtgtaaaagttgaagataatagtcttgaa-ttgaggattgtagcatagacgttggtgcagattagttcaaatgtat |
41060887 |
T |
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| Q |
109 |
atcattaagaaactaaacac |
128 |
Q |
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| T |
41060886 |
atcattaaggaactaaacac |
41060867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 21545472 - 21545544
Alignment:
| Q |
44 |
gaagttgatagtcttgaaattaatgattgtagcatagactttgaggcggattaatccaaatgtatatcattaa |
116 |
Q |
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| T |
21545472 |
gaagatgaaagtcttggactttatgattgtagtatagaccttgaagcggattagttgaaatgtatatcattaa |
21545544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 12124095 - 12124159
Alignment:
| Q |
13 |
tgataagaatgttcaagatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagca |
77 |
Q |
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| T |
12124095 |
tgataagaatgttgaagatggagtaaaggtttaagttgatagtcttggaattgattattgtagca |
12124159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27265793 - 27265861
Alignment:
| Q |
10 |
tgatgataagaatgttcaagatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagcat |
78 |
Q |
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| T |
27265793 |
tgatgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagcat |
27265861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14176747 - 14176674
Alignment:
| Q |
9 |
ttgatgataagaatgttcaagatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagcatagac |
82 |
Q |
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| T |
14176747 |
ttgatgataagaaagttgacgacggagtaaaggatgaagttgatagtcttgaaattgataattgttgcatagac |
14176674 |
T |
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