View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5345-Insertion-9 (Length: 410)

Name: NF5345-Insertion-9
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5345-Insertion-9
NF5345-Insertion-9
[»] chr7 (3 HSPs)
chr7 (8-410)||(11331589-11331993)
chr7 (212-266)||(18129520-18129575)
chr7 (220-266)||(16866455-16866501)
[»] chr2 (4 HSPs)
chr2 (217-284)||(3835223-3835290)
chr2 (217-266)||(31469078-31469127)
chr2 (217-266)||(7932750-7932799)
chr2 (217-266)||(10459273-10459322)
[»] chr4 (2 HSPs)
chr4 (208-266)||(1577613-1577671)
chr4 (205-245)||(49772359-49772399)
[»] chr5 (4 HSPs)
chr5 (217-266)||(39030570-39030619)
chr5 (205-256)||(32332534-32332585)
chr5 (217-259)||(39030624-39030666)
chr5 (217-266)||(33669981-33670030)
[»] chr1 (1 HSPs)
chr1 (217-266)||(3739868-3739917)
[»] chr8 (2 HSPs)
chr8 (217-258)||(43149510-43149550)
chr8 (217-258)||(43473200-43473241)
[»] chr3 (2 HSPs)
chr3 (217-266)||(32221524-32221573)
chr3 (220-264)||(23314730-23314774)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 11331589 - 11331993
Alignment:
Q  8 ggagcagatagcgttgggtgaagggtagttacgggccgagctacttatggctggttggctagttgccggcctctgctactctttttgaacggttgtacaa 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  11331589 ggagcagatagcgttgggtgaagggtagttacgggccgaactacttatggttggttggctggttgccggcctttgctactctttttgaacggttgtacaa 11331688  T
Q  108 atannnnnnnnnnnnnnnnnnnngtatgttggaaagggctacatctagtgctccagttgtatgttatgttgactttttgtagttttcgcacctgttttac 207  Q
    |||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  11331689 atattttttcttttgtttattttgtatgttggaaagggctacatctagtgctccagttgtatgttatgttgactttttgtagttttcgctcctcttttac 11331788  T
Q  208 tccagtctcaaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaatgtaaaccaaatccatctaacttgtttaac--nnnnnnnngc 305  Q
    ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  11331789 tccggtctcaaatataagcaaaaacaagtcaaataaagttagtgtatttggttaaaaatgtaaaccaaatccatctaacttgtttaacttttttttttgc 11331888  T
Q  306 ttatattcgaaactcaagggagtatatcttaaccattcaagaaataaataacacacactcggaaagaagtttcctttcttttcaagtaattttttctatg 405  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11331889 ttatattcgaaactcaagggagtatatctttgccattcaaaaaataaataacacacactcagaaagaagtttcctttcttttcaagtaattttttctatg 11331988  T
Q  406 tattg 410  Q
    |||||    
T  11331989 tattg 11331993  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 18129520 - 18129575
Alignment:
Q  212 gtctcaaatataagca-aaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    |||||||||||||| | |||| ||||||||||||||| |||||||| |||||||||    
T  18129520 gtctcaaatataagaagaaaaaaagtcaaataaagttgatgtatttagttaaaaat 18129575  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 16866501 - 16866455
Alignment:
Q  220 tataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    |||||||||||||  |||||  |||||||||||||||||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 16866455  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 3835290 - 3835223
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaatgtaaaccaaatccatcta 284  Q
    ||||||||| ||||| || ||||||||||||||||||| | ||||||||| |||| ||||| ||||||    
T  3835290 aaatataagaaaaaaaaactcaaataaagttaatgtatctagttaaaaatttaaatcaaatacatcta 3835223  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 31469078 - 31469127
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  31469078 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 31469127  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 7932750 - 7932799
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    |||||||||||||||| ||||||  |||||||| |||||||||| |||||    
T  7932750 aaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaat 7932799  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 10459273 - 10459322
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    ||||||||||||||||  |||||  ||||||||||||||||||| |||||    
T  10459273 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaat 10459322  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 1577671 - 1577613
Alignment:
Q  208 tccagtctcaaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    |||||||||||||||||||||||| ||||| || |||||| ||| || |||||||||||    
T  1577671 tccagtctcaaatataagcaaaaaaaagtcgaacaaagtttatgcatctggttaaaaat 1577613  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 49772359 - 49772399
Alignment:
Q  205 tactccagtctcaaatataagcaaaaataagtcaaataaag 245  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  49772359 tactccagtctcaaatataagcaaaaaaaagtcaaacaaag 49772399  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 39030570 - 39030619
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  39030570 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 39030619  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 32332585 - 32332534
Alignment:
Q  205 tactccagtctcaaatataagcaaaaataagtcaaataaagttaatgtattt 256  Q
    |||||| ||||||||||||| ||||||||||||||| | |||| ||||||||    
T  32332585 tactccggtctcaaatataaacaaaaataagtcaaacatagttgatgtattt 32332534  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 39030666 - 39030624
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggt 259  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  39030666 aaatataagcaaaaattagtcaacaaaagttaatgtatttggt 39030624  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 33670030 - 33669981
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    |||| |||||||||||  |||||| ||||||||||||||||||| |||||    
T  33670030 aaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaat 33669981  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 3739917 - 3739868
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  3739917 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 3739868  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 43149550 - 43149510
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttgg 258  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  43149550 aaatataagcaaaaa-aagtcaaataaaattaatgtatttgg 43149510  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 43473200 - 43473241
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttgg 258  Q
    |||||||||||||| |||||||||||||||| || |||||||    
T  43473200 aaatataagcaaaactaagtcaaataaagttgatttatttgg 43473241  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 32221573 - 32221524
Alignment:
Q  217 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 266  Q
    |||| ||||||||||| ||||||  ||||||||||||||||||| |||||    
T  32221573 aaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaat 32221524  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 23314774 - 23314730
Alignment:
Q  220 tataagcaaaaataagtcaaataaagttaatgtatttggttaaaa 264  Q
    ||||||||||| || |||||| |||| ||||||||||||||||||    
T  23314774 tataagcaaaagtaggtcaaagaaaggtaatgtatttggttaaaa 23314730  T

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