View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_high_12 (Length: 278)
Name: NF5345_high_12
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 35202703 - 35202980
Alignment:
| Q |
1 |
caagagtttcaagttcttcttctggttatgatcatcttcagcagcagcagcctcaggtgaatggtcttggattaggtttttcatctggggtagttaatct |
100 |
Q |
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| T |
35202703 |
caagagtttcaagttcttcttctggttatgatcatcttcagcagcagcagcctcaggtgaatggtcttggattaggtttttcatctggggtagttaatct |
35202802 |
T |
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| Q |
101 |
taatcatcatgatgattacagaaatgggtttggttcaaataataacaactacagttccatctttggttcttctactacttcaactaatgataactccatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
35202803 |
taatcatcatgatgattacagaaatgggtttggttcaaataataacaactacagttccatctttggttcttcttctacttcaactaacgataactccatg |
35202902 |
T |
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| Q |
201 |
gcctctactactccagttatggcttctctacttaactctacactactgcaacagaaattcatgagtgcaactggtggt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35202903 |
gcctctactactccagttatggcttctctacttaactctacactactgcaacagaaattcatgagtgcagctggtggt |
35202980 |
T |
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