View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_high_13 (Length: 255)
Name: NF5345_high_13
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 27189552 - 27189795
Alignment:
| Q |
5 |
agaagaagaaaagggtgacggccagggttaaaccctatggagtatggaccacactaactatatataaccgtctcctacactttcatcaactttctctttt |
104 |
Q |
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| T |
27189552 |
agaagaagaaaggggtgacggctagggttaaaccctatggagtatggaccacactaactatatataaccgtcttctacactttcatcaactttctctttt |
27189651 |
T |
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| Q |
105 |
c------------ttttctcatttcaaatcaaaccaaaacaatgaatccttcgtcaactctcacaccttcttctctcattccattacccttccctttccc |
192 |
Q |
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| T |
27189652 |
cttttctcatttcttttctcatttcaaatcaaaccaaaacaatgaatccttcgtcaactctcacaccttcttctctcattccatcacccttccctttccc |
27189751 |
T |
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| Q |
193 |
actctcttcatccaccaaacgacactgtttcaaactctcactcc |
236 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
27189752 |
actctcttcatccaccaaacgacaccgtttcaaactcccactcc |
27189795 |
T |
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