View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5345_high_14 (Length: 225)

Name: NF5345_high_14
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5345_high_14
NF5345_high_14
[»] chr6 (6 HSPs)
chr6 (44-210)||(32536648-32536814)
chr6 (93-211)||(15959084-15959202)
chr6 (121-205)||(14373289-14373373)
chr6 (166-205)||(11462171-11462210)
chr6 (121-205)||(20883331-20883415)
chr6 (121-153)||(21168035-21168067)
[»] chr3 (6 HSPs)
chr3 (93-211)||(26771259-26771377)
chr3 (110-159)||(17098163-17098212)
chr3 (166-205)||(19890436-19890475)
chr3 (121-200)||(48570337-48570416)
chr3 (121-190)||(40930826-40930895)
chr3 (121-153)||(34333113-34333145)
[»] chr2 (2 HSPs)
chr2 (93-211)||(17765232-17765350)
chr2 (110-205)||(15917411-15917507)
[»] chr8 (3 HSPs)
chr8 (102-197)||(34137242-34137337)
chr8 (127-188)||(41665673-41665734)
chr8 (121-153)||(32266374-32266406)
[»] chr4 (5 HSPs)
chr4 (121-205)||(2822335-2822419)
chr4 (108-194)||(11587483-11587569)
chr4 (121-205)||(20002476-20002560)
chr4 (123-205)||(23162932-23163014)
chr4 (121-153)||(15740031-15740063)
[»] chr5 (6 HSPs)
chr5 (121-188)||(19255421-19255488)
chr5 (121-205)||(18359388-18359472)
chr5 (124-202)||(26019287-26019365)
chr5 (121-153)||(8227836-8227868)
chr5 (121-153)||(23238193-23238225)
chr5 (177-205)||(27795241-27795269)
[»] chr7 (3 HSPs)
chr7 (166-205)||(25619217-25619256)
chr7 (121-156)||(37919351-37919386)
chr7 (121-153)||(11277550-11277582)
[»] chr1 (4 HSPs)
chr1 (121-188)||(6259592-6259659)
chr1 (115-205)||(47623367-47623456)
chr1 (128-156)||(4842211-4842239)
chr1 (121-205)||(51994026-51994110)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 32536814 - 32536648
Alignment:
44 acacatgtactatcaaatcacaatgcatagattggtgagggcttggcttggggttcatcctcaacatatttcggactattttttgcaatttattcattac 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
32536814 acacatgtactatcaaatcacaatgcatagattggtgagggcttggcttggggttgatcctcaacatatttcggattattttttgcaatttattcattac 32536715  T
144 gcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggtcctat 210  Q
    ||||||||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||    
32536714 gcaggttgtttaaaattgcaaagatctttttttcatttgatttgacttcagtgtgtttgggtcctat 32536648  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 15959084 - 15959202
Alignment:
93 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 192  Q
    |||||||||||||| |||||||| ||| |||||| ||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||     
15959084 ggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgcaggttgcttgaaatcgcgaagatcttttttccatttgatttggctta 15959183  T
193 agtgtgtttgggtcctatg 211  Q
    |||||  ||||| ||||||    
15959184 agtgtaattgggacctatg 15959202  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 14373289 - 14373373
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||||||||||||||||| || || ||| |||||||||   |  |||| || |||||||||||||||||||||||| |||||||    
14373289 attttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcattcttccatttgatttggcttcagtgtttttgggt 14373373  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 11462210 - 11462171
Alignment:
166 gatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||||| || |||||||||||||||||||||||||||||    
11462210 gatctttatttcatttgatttggcttcagtgtgtttgggt 11462171  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 20883331 - 20883415
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||| ||||||||||| | || |||||| | |||||||   |  ||||||| || ||||||||||||||||||||||| |||||    
20883331 attttgtgcaatttattgaatatgcaggtggcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtatgggt 20883415  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 21168067 - 21168035
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
21168067 attttttgcaatttattaattacgcaggttgtt 21168035  T

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Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 26771259 - 26771377
Alignment:
93 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 192  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||| | |||||| |||||||||||||||||||||||    
26771259 ggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgcaggttgcttaaaatcgcgaagattttttttccatttgatttggcttc 26771358  T
193 agtgtgtttgggtcctatg 211  Q
    |||||||||||||||||||    
26771359 agtgtgtttgggtcctatg 26771377  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 17098163 - 17098212
Alignment:
110 tatttcggactattttttgcaatttattcattacgcaggttgtttgaaat 159  Q
    |||||| ||| |||| |||||||||||||||||||||||| |||||||||    
17098163 tatttcagaccatttcttgcaatttattcattacgcaggtggtttgaaat 17098212  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 19890475 - 19890436
Alignment:
166 gatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||||| || |||||||||||||||||||||||||||||    
19890475 gatctttatttcatttgatttggcttcagtgtgtttgggt 19890436  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 48570337 - 48570416
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtt 200  Q
    ||||| ||||||||||||| || |||||| | ||||||| | |  ||||| | ||||| |||||||||||||||||||||    
48570337 attttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtt 48570416  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 40930826 - 40930895
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggct 190  Q
    ||||||||||||||||| |||| |||||||||| || |  |||| | ||||| || ||||||||||||||    
40930826 attttttgcaatttattaattatgcaggttgttcgagagggtgacgttctttctttcatttgatttggct 40930895  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 34333113 - 34333145
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
34333113 attttttgcaatttattaattacgcaggttgtt 34333145  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 17765232 - 17765350
Alignment:
93 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 192  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||   ||||||||||||| ||||||||||||||||    
17765232 ggggttgatcctcaacatatttcagaccattttttgcaacttattcattacgcaggttgcttgaaatcacgaagatctttttttcatttgatttggcttc 17765331  T
193 agtgtgtttgggtcctatg 211  Q
    |||||||||||||| ||||    
17765332 agtgtgtttgggtcttatg 17765350  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 15917507 - 15917411
Alignment:
110 tatttcggactattttttgcaatttattcattacgcaggttgtttg-aaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    |||||| ||| |||||||||||||||||||||| |||||| | | | |||| | || ||||||||||||| ||| |||| ||||| |||||||||||    
15917507 tatttcagaccattttttgcaatttattcattatgcaggtggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggt 15917411  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 34137242 - 34137337
Alignment:
102 cctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgt 197  Q
    ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||   | |||| |||  |||||||||||||||||||||||    
34137242 cctcagcatattttggaccattttttgcaatttattcattatgcaggttgtttgaaatcccgtagatatttgctccatttgatttggcttcagtgt 34137337  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 41665673 - 41665734
Alignment:
127 tgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 188  Q
    ||||||||||| |||||||||||||||||| |  | || ||||||| ||||| |||||||||    
41665673 tgcaatttattaattacgcaggttgtttgagaaggcgacgatctttcttccacttgatttgg 41665734  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 32266406 - 32266374
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
32266406 attttttgcaatttattaattacgcaggttgtt 32266374  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 2822335 - 2822419
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||| ||||||||||||| || |||||| | ||||||| | |  ||||||| ||||| ||||||||||||||||||||||||||    
2822335 attttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctttcttccacttgatttggcttcagtgtgtttgggt 2822419  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 11587483 - 11587569
Alignment:
108 catatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcag 194  Q
    |||||||||||| ||||||||||||| |||||||| |||||| | | || ||   | |||||||| || ||||||||||||||||||    
11587483 catatttcggaccattttttgcaattcattcattatgcaggtagctcgacatcccgtagatctttatttcatttgatttggcttcag 11587569  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 20002560 - 20002476
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||| ||||||||||| | || | |||| | ||||||||  |  ||||||| || |||||||||||||||||||||||||||||    
20002560 attttgtgcaatttattgaatatgtaggtggcttgaaattccgtcgatctttatttcatttgatttggcttcagtgtgtttgggt 20002476  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 23162932 - 23163014
Alignment:
123 tttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    |||||||||||||||||  | || ||| |||||||||   |  |||| || |||||||||||||||||||||||| |||||||    
23162932 tttttgcaatttattcagcatgctggtagtttgaaatcacgtcgatcgttcttccatttgatttggcttcagtgtatttgggt 23163014  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 15740063 - 15740031
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
15740063 attttttgcaatttattaattacgcaggttgtt 15740031  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 19255421 - 19255488
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 188  Q
    ||||||||||||||||| ||||||||||||||| || |||| || |||| |||||||| |||||||||    
19255421 attttttgcaatttattaattacgcaggttgttcgagattgcgacgatcatttttccacttgatttgg 19255488  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 18359388 - 18359472
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||| ||||||||||| | ||||||||| | |||||||   |  ||||||| || |||||||||||||||||||||||||||||    
18359388 attttgtgcaatttattaaatacgcaggtggcttgaaatctcgtcgatctttctttcatttgatttggcttcagtgtgtttgggt 18359472  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 26019287 - 26019365
Alignment:
124 ttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttg 202  Q
    ||||||||||||| || |||||||||| | |||||  | |  ||||||| || ||||||||||||||||||||||||||    
26019287 ttttgcaatttatccaatacgcaggttttctgaaagcgcgtcgatctttatttcatttgatttggcttcagtgtgtttg 26019365  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 8227868 - 8227836
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
8227868 attttttgcaatttattaattacgcaggttgtt 8227836  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 23238225 - 23238193
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
23238225 attttttgcaatttattaattacgcaggttgtt 23238193  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 27795269 - 27795241
Alignment:
177 catttgatttggcttcagtgtgtttgggt 205  Q
    |||||||||||||||||||||||||||||    
27795269 catttgatttggcttcagtgtgtttgggt 27795241  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 25619256 - 25619217
Alignment:
166 gatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||||| || |||||||||||||||||||||||||||||    
25619256 gatctttatttcatttgatttggcttcagtgtgtttgggt 25619217  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 37919386 - 37919351
Alignment:
121 attttttgcaatttattcattacgcaggttgtttga 156  Q
    ||||||||||||||||| ||||||||||||||||||    
37919386 attttttgcaatttattaattacgcaggttgtttga 37919351  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 11277550 - 11277582
Alignment:
121 attttttgcaatttattcattacgcaggttgtt 153  Q
    ||||||||||||||||| |||||||||||||||    
11277550 attttttgcaatttattaattacgcaggttgtt 11277582  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 6259659 - 6259592
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 188  Q
    ||||||||||||||||| |||||| |||||||| || |  | || | |||||||||||||||||||||    
6259659 attttttgcaatttattaattacgtaggttgttcgagagggagacggtcttttttccatttgatttgg 6259592  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 47623367 - 47623456
Alignment:
115 cggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||| ||||||||||||||||||| || || ||| |||||||||   |  |||| || ||||||||||||||||||| |||| |||||||    
47623367 cggaccattttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcgttcttccatttgatttggcttc-gtgtatttgggt 47623456  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 4842239 - 4842211
Alignment:
128 gcaatttattcattacgcaggttgtttga 156  Q
    |||||||||||||||||||||||||||||    
4842239 gcaatttattcattacgcaggttgtttga 4842211  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 51994026 - 51994110
Alignment:
121 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 205  Q
    ||||| ||||||||||||| || || |||   ||||||| | |  ||||| | ||||| ||||||||||||||||||||||||||    
51994026 attttatgcaatttattcaatatgctggtgccttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtttgggt 51994110  T

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