View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_high_3 (Length: 497)
Name: NF5345_high_3
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 6081940 - 6081458
Alignment:
| Q |
1 |
ctcaactaacaactatctctgctttctctttattataataacttcaaaagattggatttggtatacaaactactaataaagaaatcttataaagatattt |
100 |
Q |
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| T |
6081940 |
ctcaactaacaactatctctgctttctctttattataataacttcaaaagattggatttggtatacaaactactaataaagaaatcttataaagatattt |
6081841 |
T |
|
| Q |
101 |
taactaacttatttaatgttctcttttctaatatatatacttattcataaatcttcttataaaattaatagaagagaaatgatatatttgnnnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6081840 |
taactaacttatttaatgttcttttttctaatatatatacttcttcataaatcttcttataaaattaatagaagagaaatgatatatat--ttttttttt |
6081743 |
T |
|
| Q |
201 |
aacaagctaaaatggaacatatatatataacattaataaaaatgtttcatctcgcacaagacgtgt--nnnnnnncatctaaaataattataatgtcaag |
298 |
Q |
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| T |
6081742 |
aacaaaccaaaatggaac------atataacattaacaaaagtgtttcatcttgtacaagacgtgtaaagaaaaacatccaaaacaattacaatgtcaag |
6081649 |
T |
|
| Q |
299 |
tcaccggtgccataaaaaggaacgacacaacaaattaaactgaagaaataataacattacacgacaatactcatacaagacaaagggtgctgccaccaat |
398 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| | ||||| | |||| |||||||||||||||||||||||| |
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| T |
6081648 |
tcaccggtgccataaaaaggaacgccgcaacaaattaaactaaagaaataataacattataagacaacatccatataagacaaagggtgctgccaccaat |
6081549 |
T |
|
| Q |
399 |
catgcaatccgaaaacaaaagtatgcatattagattttagccaatcatgatatatttgttaa------tttcatgattaatcttttgtagaa |
484 |
Q |
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| T |
6081548 |
catgcaatccgaaaacaaaa-tatgcttattagattttagccaatcatgatatatttgttaatatgtttttcatgattaatcttttgtagaa |
6081458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 438
Target Start/End: Complemental strand, 27677884 - 27677781
Alignment:
| Q |
335 |
aaactgaagaaataataacattacacgacaatactcatacaagacaaagggtgctgccaccaatcatgcaatccgaaaacaaaagtatgcatattagatt |
434 |
Q |
| |
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||||||||| |||||||||||||||| | || ||||||||| | ||||||||| ||||||||||||| || |||||||||||| |||||||||| || |
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| T |
27677884 |
aaactgaagtaataataacattacaccataacactcatacatggtaaagggtgccgccaccaatcatgaaagttgaaaacaaaagtgtgcatattagttt |
27677785 |
T |
|
| Q |
435 |
ttag |
438 |
Q |
| |
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|||| |
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| T |
27677784 |
ttag |
27677781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 442
Target Start/End: Original strand, 8161797 - 8161954
Alignment:
| Q |
285 |
attataatgtcaagtcaccggtgccataaaaaggaacgacacaacaaattaaactgaagaaataataacattacacgacaatactcatacaagacaaagg |
384 |
Q |
| |
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|||| |||||||||||||| ||||||||||| |||| | |||| || |||| ||||||||||| || | ||||| | | || |||||| ||||| || |
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| T |
8161797 |
attacaatgtcaagtcaccagtgccataaaatagaacaccgcaacgaagtaaattgaagaaataacaatactacaccatgacacccatacaggacaaggg |
8161896 |
T |
|
| Q |
385 |
gtgctgccaccaatcatgcaatccgaaaacaaaagtatgcatattagattttagccaa |
442 |
Q |
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|| |||||||||||| || | || | |||||||||||||||||||||||||||| |
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| T |
8161897 |
atgtcgccaccaatcataaaagctaaagaaaaaagtatgcatattagattttagccaa |
8161954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 25740101 - 25740133
Alignment:
| Q |
370 |
catacaagacaaagggtgctgccaccaatcatg |
402 |
Q |
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| T |
25740101 |
catacaagacaaagggtgctgccaccaatcatg |
25740133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 8091074 - 8091042
Alignment:
| Q |
370 |
catacaagacaaagggtgctgccaccaatcatg |
402 |
Q |
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| T |
8091074 |
catacaagagaaagggtgctgccaccaatcatg |
8091042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 29022772 - 29022720
Alignment:
| Q |
390 |
gccaccaatcatgcaatccgaaaacaaaagtatgcatattagattttagccaa |
442 |
Q |
| |
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||||||||||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
29022772 |
gccaccaatcatgaacgccgaaaacaaaatattgcatattagattttagccaa |
29022720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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