View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_high_7 (Length: 388)
Name: NF5345_high_7
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 45514438 - 45514070
Alignment:
| Q |
1 |
actgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514438 |
actgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacatt |
45514339 |
T |
|
| Q |
101 |
caccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaagagaaagtcagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514338 |
caccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaagagaaagtcagag |
45514239 |
T |
|
| Q |
201 |
gtgcatgcaacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatcctagaggttgggaaggga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45514238 |
gtgcatgcaacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatccaagaggttgggaaggga |
45514139 |
T |
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| Q |
301 |
tgtcaggtctggccactgataaagttacttatgttgagtttgagaatgttggacctggttcaaacactg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45514138 |
tgtcaggtctggccactgataaagttacttatgttgagtttgagaatgttggacctggatcaaacactg |
45514070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 43699636 - 43699268
Alignment:
| Q |
1 |
actgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacatt |
100 |
Q |
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||||||||||||| || || ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||| ||| |
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| T |
43699636 |
actgtgaaatatatggtaccgtcgacttcatcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcgacagttcgtggtatt |
43699537 |
T |
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| Q |
101 |
caccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaagagaaagtcagag |
200 |
Q |
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||||||||| ||||||| || ||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| | ||| |||||| |
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| T |
43699536 |
caccgcacaatcacgtggaaatccatctgaaaaaacaggtttcacattccaacattgtaatttcaccatgtcacctgaagatgaaggcaaaaaatcagag |
43699437 |
T |
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| Q |
201 |
gtgcatgcaacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatcctagaggttgggaaggga |
300 |
Q |
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|||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | || ||| |||||||||||||| || |
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| T |
43699436 |
gtgcgtggaacattgggtcgtccttggagggcatattccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacaga |
43699337 |
T |
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| Q |
301 |
tgtcaggtctggccactgataaagttacttatgttgagtttgagaatgttggacctggttcaaacactg |
369 |
Q |
| |
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|| || | ||| |||||| ||||||||||| ||||||||||||||||||||||| || ||||||| |
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| T |
43699336 |
tggagggacaacccaatgataaggttacttatgtggagtttgagaatgttggacctggatctaacactg |
43699268 |
T |
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