View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_low_10 (Length: 359)
Name: NF5345_low_10
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 37160252 - 37159919
Alignment:
| Q |
17 |
aaattgttactggataggtcctttgttgtgatttataataatagcacaattgtgggctgatactgttgcaaactctgccgcaacaataatattgcagccc |
116 |
Q |
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| T |
37160252 |
aaattgttactggataggtcctttgttgtgatttataatcatagcacaattgtgggctgatactgttgcaaactctgccgcaacaataatattgcagccc |
37160153 |
T |
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| Q |
117 |
catggggtccagaaattaaaactgctaaaaatatactgatctcaggcatgacaaaagtttgcacacattgacactcattaatgtaaagatttttatacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160152 |
catggggtccagaaattaaaactgctaaaaatatactgatctcaggcatgacaaaagtttgcacacattgacactcattaatgtaaagatttttatacag |
37160053 |
T |
|
| Q |
217 |
gtctctcattttgtggtgcatcgtgttggagaatcttaacgataagtacgaatatattgtagtagcttgtccatataaagtgaattatgttatttgatag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37160052 |
gtctctcattttgtggtgcatcgtgttggagaatcttaacgataagtacgtatatattgtagtagcttgtccatattaagtgaattatgttatttgatag |
37159953 |
T |
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| Q |
317 |
cagttaatattctctaactagattgaacgatatt |
350 |
Q |
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| T |
37159952 |
cagttaatattctctaactagattgaacgatatt |
37159919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 43393979 - 43393906
Alignment:
| Q |
278 |
gtagcttgtccatataaagtgaattatgttatttgatagcagttaatattctctaactag-attgaacgatatt |
350 |
Q |
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| T |
43393979 |
gtagcttgtccttataaagtgaattctgttatttgatagcagttaatttcctctaactagaattgaatgatatt |
43393906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 43394335 - 43394258
Alignment:
| Q |
38 |
tttgttgtgatttataataatagcacaattgtgggctgatactgttgcaaactctgccgcaacaataatattgcagcc |
115 |
Q |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| || || | || |||||||||||||||| |
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| T |
43394335 |
tttgttgtgatttataatcatagcacaattgcgggttgatgtcgttgcagacactactacagcaataatattgcagcc |
43394258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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