View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_low_12 (Length: 302)
Name: NF5345_low_12
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 29848783 - 29848509
Alignment:
| Q |
18 |
agtttaatccaaacatgtcagtatttgactgtattctacttgtcttgtatctcttcggcttttattagacgcctccaacattttctcattggagacattc |
117 |
Q |
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| T |
29848783 |
agtttaatccaaacatgtcagtacttgactgtattctacttgtcttgtatctcttcggcttttattagacgcctccaacattttctcattggagacattc |
29848684 |
T |
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| Q |
118 |
attgataatagcattaaaattacacacatgggatggccactattgttttcaccacaagggtccattataattcttctacttgctcaaaatatactagatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29848683 |
attgataatagcattaaaattacacacatgggatggccactattgttttcaccacaagggtccattattattcttctacttgctcaaaatatactagatg |
29848584 |
T |
|
| Q |
218 |
cttgtgttcaaaacagagcttgttctcttcacatggtattgtccataatgaacttcagaagaaggtggacctatg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848583 |
cttgtgttcaaaacagagcttgttctcttcacatggtattgtccataatgaacttcagaagaaggtggacctatg |
29848509 |
T |
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