View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5345_low_13 (Length: 300)

Name: NF5345_low_13
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5345_low_13
NF5345_low_13
[»] chr8 (2 HSPs)
chr8 (12-283)||(11401984-11402252)
chr8 (198-283)||(11403137-11403222)
[»] chr6 (2 HSPs)
chr6 (58-160)||(29303559-29303658)
chr6 (198-283)||(29303714-29303799)
[»] chr5 (4 HSPs)
chr5 (58-160)||(12529384-12529483)
chr5 (58-160)||(35841539-35841638)
chr5 (198-283)||(12529243-12529328)
chr5 (198-282)||(35841694-35841778)
[»] chr4 (5 HSPs)
chr4 (58-160)||(27730597-27730696)
chr4 (58-160)||(45965826-45965925)
chr4 (80-160)||(24146585-24146665)
chr4 (198-283)||(27730456-27730541)
chr4 (198-283)||(45965981-45966066)
[»] chr1 (3 HSPs)
chr1 (58-160)||(29282638-29282737)
chr1 (58-160)||(49220633-49220732)
chr1 (198-283)||(29282497-29282582)
[»] chr2 (4 HSPs)
chr2 (58-160)||(42913497-42913596)
chr2 (58-160)||(42300412-42300511)
chr2 (193-283)||(42300562-42300652)
chr2 (193-283)||(42913356-42913446)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 11401984 - 11402252
Alignment:
Q  12 aatactcgtagaagggcaatatcacaaattatcaaagaaataaagagggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  11401984 aatactcgtagaagggcaatatcacaaattatcaaagaaataaagagggacatattgaagtt---gttacatgaaggagtagagaaaactccgaaataaa 11402080  T
Q  112 aactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttcatggaacaatatttttctcccgttacaaaatttgagcgtgtatggagaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11402081 aactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttcatggaacaatatttttctcctgttacaaaatttgagcgtgtatggagaaaa 11402180  T
Q  212 tattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402181 tattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 11402252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 11403222 - 11403137
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||||||||||| |||||  ||||| ||||||||||||||||| ||||   | ||||| ||| ||  ||| |||||||||||||||    
T  11403222 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggtcatgtggtgactac 11403137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 29303559 - 29303658
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  29303559 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 29303655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 29303714 - 29303799
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||||    
T  29303714 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactac 29303799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 12529483 - 12529384
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  12529483 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 12529387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 35841539 - 35841638
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  35841539 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 35841635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 12529328 - 12529243
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||||    
T  12529328 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactac 12529243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 35841694 - 35841778
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgacta 282  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||    
T  35841694 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgacta 35841778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 27730696 - 27730597
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  27730696 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 27730600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 45965826 - 45965925
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  45965826 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 45965922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 24146585 - 24146665
Alignment:
Q  80 acatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 160  Q
    |||| |||||||  ||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| |||||    
T  24146585 acataaaggagtgaagaaagctcagaaatcaaagttgcagtctctgcgtagagagtacgaaaggtatgaaatgtctagttc 24146665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 27730541 - 27730456
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||||    
T  27730541 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactac 27730456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 45965981 - 45966066
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||||    
T  45965981 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactac 45966066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 29282737 - 29282638
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  29282737 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 29282641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 49220732 - 49220633
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  49220732 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 49220636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 29282582 - 29282497
Alignment:
Q  198 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||||    
T  29282582 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactac 29282497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 42913596 - 42913497
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| ||    
T  42913596 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 42913500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 42300412 - 42300511
Alignment:
Q  58 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 157  Q
    ||||||||||||||||   || |||| |||||||||||||| ||  ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| ||    
T  42300412 gggacatattgaagtt---gtcacataaaggagtagagaaagcttagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 42300508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 283
Target Start/End: Original strand, 42300562 - 42300652
Alignment:
Q  193 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||||| |  |||  |||||||  ||||||||||||||||||    
T  42300562 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatgatcatgtggtgactac 42300652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 42913446 - 42913356
Alignment:
Q  193 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactac 283  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||||    
T  42913446 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactac 42913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University