View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5345_low_3 (Length: 524)

Name: NF5345_low_3
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5345_low_3
NF5345_low_3
[»] chr4 (3 HSPs)
chr4 (182-502)||(35202252-35202572)
chr4 (22-155)||(35202593-35202726)
chr4 (300-415)||(22483403-22483518)
[»] chr2 (2 HSPs)
chr2 (282-457)||(3945850-3946025)
chr2 (281-415)||(39741065-39741199)
[»] chr1 (2 HSPs)
chr1 (283-436)||(24878842-24878995)
chr1 (282-415)||(34645998-34646131)
[»] chr5 (1 HSPs)
chr5 (326-437)||(13481015-13481126)
[»] chr3 (2 HSPs)
chr3 (281-448)||(41895775-41895942)
chr3 (281-436)||(34976123-34976278)
[»] chr8 (2 HSPs)
chr8 (288-436)||(28437310-28437458)
chr8 (327-436)||(5211208-5211317)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 182 - 502
Target Start/End: Complemental strand, 35202572 - 35202252
Alignment:
Q  182 agaaggagggtttgaattagcactagtaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaggagtgatttggtcgtttaagacgt 281  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35202572 agaaggagggtttgaattagcactattaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaagagtgatttggtcgtttaagacgt 35202473  T
Q  282 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202472 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 35202373  T
Q  382 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctgttgaagaagctcttgacctggttt 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202372 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctgttgaagaagctcttgacctggttt 35202273  T
Q  482 ttccataaccctatttccacc 502  Q
    |||||||||||||||||||||    
T  35202272 ttccataaccctatttccacc 35202252  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 35202726 - 35202593
Alignment:
Q  22 cagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcacatcatgacaagaagagttaccataaagaagagaattgat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202726 cagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcacatcatgacaagaagagttaccataaagaagagaattgat 35202627  T
Q  122 atggtttgaggtagaagcaatatcaaaactatgg 155  Q
    ||||||||||||||||||||||||||||||||||    
T  35202626 atggtttgaggtagaagcaatatcaaaactatgg 35202593  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 22483403 - 22483518
Alignment:
Q  300 ccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagt 399  Q
    |||||||||||||| || || ||||| |||||| | |||||||||||  |||| |  |||||||| | |||||||||||| | ||| || || || ||||    
T  22483403 ccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagt 22483502  T
Q  400 aacagaatttagtgtt 415  Q
    |||| ||||| |||||    
T  22483503 aacaaaatttggtgtt 22483518  T

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Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 282 - 457
Target Start/End: Original strand, 3945850 - 3946025
Alignment:
Q  282 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 381  Q
    |||||| ||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| | ||| || ||||| ||||| |||||||||||||| |    
T  3945850 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 3945949  T
Q  382 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctg 457  Q
    |||| ||||| || |||||||| || || ||||||||||| ||||||||||||||| | | |||||||||||||||    
T  3945950 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctg 3946025  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 415
Target Start/End: Complemental strand, 39741199 - 39741065
Alignment:
Q  281 tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat 380  Q
    ||||||||||||||| ||||| ||||||||||| || || | |||||||||| | |||||||| ||| | || | ||||||||| | |||||| || |      
T  39741199 tttgttttttctgcatccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagta 39741100  T
Q  381 aaactatagttattatagtaacagaatttagtgtt 415  Q
    | ||| ||||| || || ||||||||||| |||||    
T  39741099 agactgtagttgttgtaataacagaatttggtgtt 39741065  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 283 - 436
Target Start/End: Complemental strand, 24878995 - 24878842
Alignment:
Q  283 tgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataa 382  Q
    ||||||||||||| ||||||||||||||||| ||||| || | ||||||| |||||||||| ||| | ||  ||||||| || | ||||||||| | |||    
T  24878995 tgttttttctgcagccaccaccaacaggaacatttctgagggatccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaa 24878896  T
Q  383 actatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca 436  Q
     || |||||||| ||||| |||||||| |||||||| ||| |||| | ||||||    
T  24878895 gctgtagttattgtagtagcagaattttgtgtttgaagaaccacatcttggaca 24878842  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 34646131 - 34645998
Alignment:
Q  282 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 381  Q
    |||||||||||  |||||||||||||||||| ||||||||  | |||||||   |||||||| ||| |||| | ||||||||| | |||||||||||  |    
T  34646131 ttgttttttcttgaaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaaatatcttggttgtgtca 34646032  T
Q  382 aactatagttattatagtaacagaatttagtgtt 415  Q
    |||||||||| || |||||||| ||||| |||||    
T  34646031 aactatagttgttgtagtaacaaaattttgtgtt 34645998  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 13481126 - 13481015
Alignment:
Q  326 tccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatca 425  Q
    ||||||| |||||||||||||| |||| | ||||||||| ||||||||||||| ||| |||||||| || ||||| |||||||| ||||| | ||| |||    
T  13481126 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgagtca 13481027  T
Q  426 caacgtggacac 437  Q
    || | |||||||    
T  13481026 catcttggacac 13481015  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 281 - 448
Target Start/End: Complemental strand, 41895942 - 41895775
Alignment:
Q  281 tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat 380  Q
    ||||||||||||  |||||||||| |||||||| ||||| |  |  ||||||   |||||||| ||| |||||| |||||| ||||  |||||||||||     
T  41895942 tttgttttttcttgaaccaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgag 41895843  T
Q  381 aaactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttg 448  Q
    |  ||||||||||| |||||||||||||| ||||| | |||||  || | ||||||  ||||||||||    
T  41895842 aggctatagttattgtagtaacagaattttgtgttagttgaattgcaccttggacagtttaaagcttg 41895775  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 436
Target Start/End: Original strand, 34976123 - 34976278
Alignment:
Q  281 tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat 380  Q
    |||||||||||| || || ||||||||||| | ||| ||||||||||| ||| | |||||||| ||| |||| |  ||||||||||  ||||| || ||     
T  34976123 tttgttttttctacagcctccaccaacagggatgttcctaagtgttcctcctttggtccaataccttctacaagtcttgcagaagtaccttggctgagag 34976222  T
Q  381 aaactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca 436  Q
    | ||| || || || ||||| |||||||| ||||  | ||||||||| | ||||||    
T  34976223 agactgtaattgttgtagtagcagaatttggtgtgagttgaatcacaccttggaca 34976278  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 436
Target Start/End: Complemental strand, 28437458 - 28437310
Alignment:
Q  288 tttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactat 387  Q
    ||||| |||||||||||||  |||||||| |  |  | ||||||  |||||||||||||| | || | ||||||||| ||||||||||| |  | ||| |    
T  28437458 tttctacaaccaccaccaatcggaacgttacgcaacgatccaccatttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgt 28437359  T
Q  388 agttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca 436  Q
    |||| || |||||||||||||| |||||||  |||||||| | ||||||    
T  28437358 agttgttgtagtaacagaattttgtgtttggagaatcacatcttggaca 28437310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 436
Target Start/End: Original strand, 5211208 - 5211317
Alignment:
Q  327 ccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatcac 426  Q
    |||||| ||||||||||||||||||||  |||||| || || | ||||||||| | | | ||||| || ||||| |||||||| |||||   ||| ||||    
T  5211208 ccaccttttgtccaatatcttttacagtttttgcaaaaatggcgtggttgtgagagattgtagttgttgtagtagcagaattttgtgttgtttgattcac 5211307  T
Q  427 aacgtggaca 436  Q
    ||||||||||    
T  5211308 aacgtggaca 5211317  T

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