View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_low_5 (Length: 434)
Name: NF5345_low_5
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 23407954 - 23407544
Alignment:
| Q |
16 |
tcaataacaatttccactctgatttttatatatttcctccaagtcctataattgttgtcctcatcatacttggtcattccaccaatatgacttccaacta |
115 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
23407954 |
tcaataacaatttccactctgattttcatatgtttcctccaaggcccataattgttgtcctcatcgtacttgatcattccaccaatatgacttccaacta |
23407855 |
T |
|
| Q |
116 |
acgctcccatagttgtatcgatgatgccgaagggaagttgatgaacttgaacccaaatctccgctgtgttcatttggataaccataggatcttcacctat |
215 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
23407854 |
acgctcctatagttgtatcgatgatgccgaagggaaattgatgaacttgaacccaaatctccgttgtgttcatttggatagccataggatcttcacctat |
23407755 |
T |
|
| Q |
216 |
agcaacgttctgcaagataatctta-ttttatcaattagtcaaggacttccttgaaaaattctctcccgatca-cttataaaaattgaaccatatactta |
313 |
Q |
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|||||| ||||||||||| ||| || |||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
23407754 |
agcaaccttctgcaagatgatcatatttttatcaattagtcaagtacttccatgaaaaattctctccagatcaccttataacaattgaaccatatactta |
23407655 |
T |
|
| Q |
314 |
ttatcctccatagacattaaagtaatttttctccaagattgccacatgctccctagtctttcttcaatcgtacataggtgaaccagtttgttcaccacca |
413 |
Q |
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| T |
23407654 |
ttatcctccatagacattaaagtaatttttctccaagattgccacatgctccctagtctttcttcaatcgtacataggtgaaccagtttgttcaccacca |
23407555 |
T |
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| Q |
414 |
ccctccctatg |
424 |
Q |
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| T |
23407554 |
ccctccctatg |
23407544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 23408665 - 23408854
Alignment:
| Q |
23 |
caatttccactctgatttttatatatttcctccaagtcctataattgttgtcctcatcatacttggtcattccaccaatatgacttccaactaacgctcc |
122 |
Q |
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||||||||||||||||||| | |||||| ||||| | || ||| ||||| ||||||||| | || ||||| || |||||||||||||||||| ||||| |
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| T |
23408665 |
caatttccactctgattttcacatattttctccacggcccatagttgttctcctcatcaaagatgaccattcaacaaatatgacttccaactaaagctcc |
23408764 |
T |
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| Q |
123 |
catagttgtatcgatgatgccgaagggaagttgatgaacttgaacccaaatctccgctgtgttcatttggataaccataggatcttcacc |
212 |
Q |
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| T |
23408765 |
tatagttgtatccatgaaaccgaatggaagttggtgatcttgaacccaaatatctattgtgttcattgggatagccatatggtcttcacc |
23408854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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