View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5345_low_9 (Length: 386)
Name: NF5345_low_9
Description: NF5345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5345_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 13376200 - 13375839
Alignment:
| Q |
14 |
tactatgtggcattatgcattgttgagaaacaattggtcttcgttgttcgctttgatgtggtagaaaggtacac--------acttcatctcattccgtt |
105 |
Q |
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| T |
13376200 |
tactatgtggcattatgcattgttgagaaacaattggtcttcgttgttcactttgatgtggtagaa-ggtacacttgttggcacttcatctcattccgtt |
13376102 |
T |
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| Q |
106 |
tttgtgnnnnnnntattttaagaaacatcaataataatcattttgatttaaactaatttgatttgtatgttcaacaatctttcgttggatgattttgtag |
205 |
Q |
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| T |
13376101 |
tttgtgaaaaaaatattttaagaaacatcaataataatcattttgatttaaactaatttgatttgtatgttcaacaatctttcgttggatgattttgtag |
13376002 |
T |
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| Q |
206 |
tttatgaaatttgtgtttgctcaatgtcctaatatagtttgatcattccataccaaataatctcatattttggttaagaaattgatgaaatctttatttg |
305 |
Q |
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| T |
13376001 |
tttatgaaatttgtgtttgctcaatgtcctaatatagtttgatcattccataccaaataatctcatattttggttaagaaattgatgaaatctttatctg |
13375902 |
T |
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| Q |
306 |
tgtagtggtatttgtaagacaaagcacatttattttcttttgggtgcacaatgttgcaccagc |
368 |
Q |
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| T |
13375901 |
tgtagtggtatttgtaagacaaagcacatttattttcttttgagtgcacaatgttgcaccagc |
13375839 |
T |
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