View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347-Insertion-10 (Length: 242)
Name: NF5347-Insertion-10
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347-Insertion-10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 29776155 - 29776387
Alignment:
| Q |
10 |
tgttacatacaagatacaaatcaacataatcaagctggaattctgccaaagtcttttccaatgctagtggtacaccttctggagcatgatcagtattcct |
109 |
Q |
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| T |
29776155 |
tgttacatacaagatacaaatcaacataatcaagctggaattctgccaaagtcttttccaatgctagtggtacatcttctggagcatgatcagtattcct |
29776254 |
T |
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| Q |
110 |
gcagcgcacatcatcttattagatactactaaacagtgaacaagactaacacattcataaattagctaaaacattcatacaaaccagagtttagaggtaa |
209 |
Q |
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| T |
29776255 |
gcagtgcacagcatcttattagatactactaaacagtgaacaagactaacacattcataaattagctaaaacattcatacaaaccagagtttagaggtaa |
29776354 |
T |
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| Q |
210 |
tccacaaatcttcgcgcttcactacgccctcat |
242 |
Q |
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| T |
29776355 |
tccacaaatcttcgcgcttcactacgccctcat |
29776387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 29786324 - 29786439
Alignment:
| Q |
12 |
ttacatacaagatacaaatcaacataatcaagctggaattctgccaaagtcttttccaatgctagtggtacaccttctggagcatgatcagtattcctgc |
111 |
Q |
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||||||||||||||||||||||||||||||||||| || |||| ||||||| | ||||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
29786324 |
ttacatacaagatacaaatcaacataatcaagctgtaagtctgtcaaagtcctgtccaatgctagcggcacatcttctggagcatgatcagtattcctgc |
29786423 |
T |
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| Q |
112 |
agcgcacatcatctta |
127 |
Q |
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| T |
29786424 |
agtgcacatcatctta |
29786439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 29786681 - 29786730
Alignment:
| Q |
188 |
acaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgcc |
237 |
Q |
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| T |
29786681 |
acaaaccagagtttagaggtaatccacaaatcttcacgtttcactacgcc |
29786730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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