View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5347-Insertion-2 (Length: 960)

Name: NF5347-Insertion-2
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5347-Insertion-2
NF5347-Insertion-2
[»] chr6 (13 HSPs)
chr6 (8-956)||(17277479-17278417)
chr6 (351-568)||(17265993-17266206)
chr6 (27-97)||(17266243-17266316)
chr6 (239-331)||(32933979-32934070)
chr6 (216-331)||(3880244-3880359)
chr6 (212-330)||(9224263-9224380)
chr6 (141-233)||(33968327-33968419)
chr6 (238-332)||(13423718-13423812)
chr6 (115-253)||(20500186-20500323)
chr6 (223-336)||(20701425-20701537)
chr6 (266-332)||(16180488-16180553)
chr6 (293-338)||(4043342-4043387)
chr6 (130-163)||(13098348-13098381)
[»] chr3 (15 HSPs)
chr3 (111-329)||(25594142-25594361)
chr3 (103-332)||(823028-823257)
chr3 (212-331)||(32010117-32010236)
chr3 (171-331)||(45354540-45354700)
chr3 (93-339)||(27399195-27399446)
chr3 (210-331)||(46358014-46358135)
chr3 (216-331)||(50518721-50518836)
chr3 (171-302)||(40689392-40689524)
chr3 (216-331)||(4171078-4171193)
chr3 (216-331)||(14893264-14893379)
chr3 (230-331)||(33143584-33143685)
chr3 (216-332)||(25648017-25648133)
chr3 (222-306)||(37123710-37123794)
chr3 (223-330)||(48892986-48893093)
chr3 (212-326)||(30935014-30935127)
[»] chr8 (9 HSPs)
chr8 (130-331)||(25184754-25184953)
chr8 (210-339)||(12197699-12197828)
chr8 (210-339)||(12442127-12442256)
chr8 (130-331)||(9831629-9831834)
chr8 (171-278)||(15906998-15907105)
chr8 (260-332)||(2613178-2613250)
chr8 (245-332)||(8843745-8843830)
chr8 (112-163)||(10248327-10248378)
chr8 (293-331)||(22325734-22325772)
[»] scaffold1613 (1 HSPs)
scaffold1613 (115-327)||(631-843)
[»] chr1 (31 HSPs)
chr1 (115-327)||(38544352-38544564)
chr1 (171-306)||(41126108-41126243)
chr1 (216-331)||(38546815-38546930)
chr1 (216-331)||(9312972-9313087)
chr1 (210-331)||(27905760-27905880)
chr1 (216-332)||(27102516-27102632)
chr1 (111-320)||(17033838-17034032)
chr1 (225-305)||(37200485-37200565)
chr1 (210-339)||(32882695-32882820)
chr1 (216-331)||(34775206-34775320)
chr1 (221-275)||(32863234-32863288)
chr1 (216-332)||(49820489-49820606)
chr1 (279-339)||(30762013-30762073)
chr1 (111-339)||(42374414-42374637)
chr1 (216-331)||(11439652-11439767)
chr1 (236-331)||(26602457-26602550)
chr1 (213-331)||(46603691-46603809)
chr1 (171-241)||(16577573-16577643)
chr1 (222-306)||(376463-376547)
chr1 (216-331)||(9557241-9557357)
chr1 (269-332)||(10605082-10605145)
chr1 (217-316)||(52278617-52278714)
chr1 (266-332)||(7451892-7451958)
chr1 (173-331)||(18844913-18845070)
chr1 (210-331)||(10785093-10785214)
chr1 (103-204)||(26602568-26602669)
chr1 (276-336)||(27431351-27431411)
chr1 (103-163)||(37200362-37200422)
chr1 (111-162)||(38548838-38548889)
chr1 (212-254)||(16149106-16149148)
chr1 (112-162)||(16577529-16577579)
[»] chr2 (32 HSPs)
chr2 (111-331)||(22884746-22884964)
chr2 (171-331)||(20572362-20572521)
chr2 (111-332)||(25504520-25504739)
chr2 (219-330)||(27740325-27740435)
chr2 (179-330)||(2063175-2063327)
chr2 (216-303)||(13337584-13337671)
chr2 (228-331)||(29487447-29487548)
chr2 (226-332)||(33788257-33788362)
chr2 (214-331)||(10173211-10173328)
chr2 (109-298)||(24308375-24308568)
chr2 (173-320)||(44593969-44594116)
chr2 (216-332)||(4472277-4472393)
chr2 (222-331)||(4975085-4975194)
chr2 (222-331)||(4992993-4993102)
chr2 (112-289)||(16952018-16952194)
chr2 (112-289)||(17022683-17022859)
chr2 (272-339)||(30965919-30965986)
chr2 (111-228)||(13698999-13699116)
chr2 (216-332)||(7696295-7696411)
chr2 (260-329)||(8793495-8793564)
chr2 (210-330)||(6173851-6173970)
chr2 (112-163)||(7696231-7696282)
chr2 (280-331)||(33533376-33533427)
chr2 (103-188)||(33788385-33788470)
chr2 (216-331)||(37770285-37770397)
chr2 (210-302)||(41113401-41113493)
chr2 (112-159)||(41113502-41113549)
chr2 (218-331)||(15361059-15361172)
chr2 (111-163)||(15126187-15126240)
chr2 (130-163)||(15360986-15361019)
chr2 (112-185)||(17060093-17060165)
chr2 (226-331)||(37559800-37559905)
[»] chr5 (17 HSPs)
chr5 (111-332)||(8731168-8731387)
chr5 (228-332)||(23426646-23426750)
chr5 (171-306)||(24071918-24072053)
chr5 (216-331)||(26405180-26405295)
chr5 (248-331)||(17853111-17853194)
chr5 (216-332)||(25992335-25992451)
chr5 (216-332)||(13953877-13953995)
chr5 (111-243)||(17853753-17853884)
chr5 (216-339)||(8297805-8297927)
chr5 (216-306)||(30097667-30097757)
chr5 (222-330)||(31742504-31742611)
chr5 (216-321)||(27713406-27713512)
chr5 (216-332)||(7194932-7195048)
chr5 (112-163)||(30097602-30097653)
chr5 (216-330)||(26045596-26045710)
chr5 (216-254)||(33258598-33258636)
chr5 (111-188)||(39183939-39184016)
[»] chr7 (21 HSPs)
chr7 (117-332)||(31409591-31409807)
chr7 (111-332)||(28534136-28534341)
chr7 (112-306)||(23983474-23983668)
chr7 (113-326)||(9427715-9427930)
chr7 (212-332)||(3478679-3478798)
chr7 (171-331)||(9107440-9107600)
chr7 (103-331)||(22567725-22567950)
chr7 (216-330)||(42532892-42533006)
chr7 (216-331)||(26385792-26385903)
chr7 (266-331)||(47456706-47456770)
chr7 (235-331)||(6726051-6726147)
chr7 (230-330)||(48058306-48058405)
chr7 (225-332)||(13312180-13312287)
chr7 (224-311)||(16828752-16828839)
chr7 (19-56)||(10621064-10621101)
chr7 (214-331)||(40292642-40292757)
chr7 (266-330)||(33719349-33719413)
chr7 (274-338)||(9657715-9657779)
chr7 (216-331)||(6716368-6716483)
chr7 (214-339)||(2359342-2359470)
chr7 (130-163)||(48058443-48058476)
[»] chr4 (14 HSPs)
chr4 (226-339)||(12296518-12296630)
chr4 (228-336)||(20632124-20632233)
chr4 (181-296)||(46487579-46487694)
chr4 (211-332)||(19814848-19814970)
chr4 (216-332)||(28967209-28967324)
chr4 (208-331)||(41117600-41117723)
chr4 (265-331)||(37347297-37347363)
chr4 (211-258)||(39420741-39420788)
chr4 (216-332)||(38930122-38930238)
chr4 (222-331)||(42719496-42719605)
chr4 (274-338)||(13528739-13528803)
chr4 (284-332)||(21983506-21983553)
chr4 (239-332)||(9262800-9262893)
chr4 (130-163)||(12296446-12296479)
[»] scaffold0050 (2 HSPs)
scaffold0050 (210-331)||(37035-37156)
scaffold0050 (99-160)||(36963-37024)
[»] scaffold0063 (1 HSPs)
scaffold0063 (216-314)||(58462-58560)
[»] scaffold0002 (1 HSPs)
scaffold0002 (269-332)||(426559-426622)
[»] scaffold0499 (1 HSPs)
scaffold0499 (130-163)||(6829-6862)


Alignment Details
Target: chr6 (Bit Score: 751; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 8 - 956
Target Start/End: Complemental strand, 17278417 - 17277479
Alignment:
Q  8 aaataaatattaatctttgtttccaatcgatgagttggatttcttagatataattgatgcatgtaaattggtgtggaattttaatatatggtttacagtg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  17278417 aaataaatattaatctttgtttccaatcgatgagttggatttcttagatataattgatgcatgtaaattggtgtggaattttaatatattgttttcagtg 17278318  T
Q  108 tttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgttta 207  Q
    || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||||||||| |    
T  17278317 ttcgtttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtccgcatgggtgttgaaggtagggtttggctagatcttgtgttca 17278218  T
Q  208 atggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagc 307  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||    
T  17278217 atggtgtcttttatgatgtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccggtctctgttcatcttaagcagc 17278118  T
Q  308 gatctggtttttaaataaaatttgccgttaaatnnnnnnnnnntccattacacgctctctaattctttccatatataatttttggttttgattcttcaat 407  Q
    |||||||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17278117 gatctggtttttaaataaaatttgccgttaaataaaaaaaaa-tcaattacacgctctctaattctttccatatataatttttggttttgattcttcaat 17278019  T
Q  408 ttttataattctttatgatatgttgtaagacattgaaacagttatatgcaaataaggcaatttatttgtacgattacaaagcatgatagacgtcatggaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17278018 ttttataattctttatgatatgttgtaagacattgaaacagttatatgcaaataaggcaatttatttgtacgattacaaagcatgatagacgtcatggaa 17277919  T
Q  508 attagaatgattgaaatgaaaattaaatgggcgcaagagtagttatatagagctagataacgattcctaacaacttgaatttcctagtcatctcaattag 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277918 attagaatgattgaaatgaaaattaaatgggcgcaagagtagttatatagagctagataacgattcctaacaacttgaatttcctagtcatctcaattag 17277819  T
Q  608 ctttaacagggtggaaggagttttaaactctgttagatatcataaatacatcagctaaatatgacatgaacaaagtttaacaaccatgcatggtagaagc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277818 ctttaacagggtggaaggagttttaaactctgttagatatcataaatacatcagctaaatatgacatgaacaaagtttaacaaccatgcatggtagaagc 17277719  T
Q  708 catcaaagtcttgaatcaaaagattaaccatttaagtagaagctaaaataatcgaagtcatttgtttcttataaattactgcattactaatatttccaca 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277718 catcaaagtcttgaatcaaaagattaaccatttaagtagaagctaaaataatcgaagtcatttgtttcttataaattactgcattactaatatttccaca 17277619  T
Q  808 ctaccaaatcaacaaaaactttaaaaacannnnnnnnnctttctattttgtaagaagtaattcctttggttaggggtttagtggtgtgaaaacctcggcc 907  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||  || |||| ||||||||| ||||| ||||||||| |    
T  17277618 ctaccaaatcaacaaaaactttaaaaaca-ttttttttctttctattttgtaagaagtaattc--tttgtta-gggtttagt-gtgtg-aaacctcgg-c 17277526  T
Q  908 ggcatctttatagtacataaacggaaggcaaccttttctcttccttttg 956  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  17277525 ggcatctttatagtacataaacgg-aggcaacc-tttctcttccttttg 17277479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 351 - 568
Target Start/End: Complemental strand, 17266206 - 17265993
Alignment:
Q  351 tccattacacgctctctaattctttccatatataatttttggttttgattcttcaatttttataattctttatgatatgttgtaagacattgaaacagtt 450  Q
    |||||||| || || ||||||||||| ||||||| ||||| |  || || |||   |||||| || || |||||||||||||||||||||||||| ||||    
T  17266206 tccattactcgatccctaattctttcgatatatatttttttgcattaatactttcgtttttaaaagtcattatgatatgttgtaagacattgaaatagtt 17266107  T
Q  451 atatgcaaataaggcaatttatttgtacgattacaaagcatgatagacgtcatggaaattagaatgattgaaatgaaaattaaatgggcgcaagagtagt 550  Q
    ||||||||||| |||||| |    |||| |||||||||||| |||||||||||| |||||||||| |||  |||||||||||||||  | ||||||| ||    
T  17266106 atatgcaaatatggcaatct----gtaccattacaaagcataatagacgtcatgaaaattagaatcattcgaatgaaaattaaatgaacacaagagtggt 17266011  T
Q  551 tatatagagctagataac 568  Q
    ||| || |||||||||||    
T  17266010 tatgtaaagctagataac 17265993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 17266316 - 17266243
Alignment:
Q  27 tttccaatcgatgagttggatttcttagatataat---tgatgcatgtaaattggtgtggaattttaatatatg 97  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||| || ||||||||    
T  17266316 tttccaatcgatgagttggatttcttagatataataactgatgcatgtaaatgggtgtggaacttcaatatatg 17266243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 32934070 - 32933979
Alignment:
Q  239 gttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    ||||||||||||||||||   ||||| ||||||| ||| ||||||| |||||||||| ||||||||||  |||||||| ||||||||||||||    
T  32934070 gttccacctatatacgacgtctttagtttgtattatct-aatcaccagtctctgttcatcttgagcaggaatctggttgttaaataaaatttg 32933979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 3880359 - 3880244
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||  |||||||| | ||||||||  || ||| | ||||||| || |  ||||||||||||||||||||||||||| |||||| |    
T  3880359 ttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatctgat 3880260  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  3880259 tgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 9224263 - 9224380
Alignment:
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 311  Q
    |||||||  |||||||||||||||||||||||  ||||||||||||| ||| | ||||| | |||  || ||| ||||||||||||||||  ||| |||     
T  9224263 tgtctttgttggtgtttattttcgggtgttccttctatatacgacaccttttggttgtactttctttattaccagtctctgttcgtcttgtacagggatt 9224362  T
Q  312 tggtttttaaataaaattt 330  Q
    | |||||| ||||||||||    
T  9224363 tagttttt-aataaaattt 9224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 33968419 - 33968327
Alignment:
Q  141 atgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttatttt 233  Q
    |||| ||||||||||||||||||   ||  ||||||||||||||||||||||||| |  ||||| ||  |||||||||||  |||||||||||    
T  33968419 atgtctattttggtgggtgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgtaggggtgtcttttacagtgtttatttt 33968327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 13423718 - 13423812
Alignment:
Q  238 tgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    |||||| |||||||||||| | |||||||||||||||| |  |||  ||||||||||||||||||| || || ||  |  |||||||||||||||    
T  13423718 tgttccgcctatatacgacgcctttagattgtattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgc 13423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 20500186 - 20500323
Alignment:
Q  115 cgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgt 214  Q
    ||||| ||||| || |||||||||   ||||| ||||||||| ||||||     ||||||||||||||||||||||| ||| |  | ||  ||   ||||    
T  20500186 cgtgatggagtctgatttaggtggagttgtttcttttggtggttgttgtccttggtggtgttgaaggtagggtttggttaggtggtttgcgtatgagtgt 20500285  T
Q  215 cttttatggtgtttattttcgggtgttccacctatatac 253  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  20500286 cttttatggtgtttatttt-gggtgttccgcctatatac 20500323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 20701537 - 20701425
Alignment:
Q  223 gtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaa 322  Q
    |||||||||| | |||||||| |||||||||  | | ||| | |||||||||| |  |||||| ||||||||||||||||| || ||| ||||| || ||    
T  20701537 gtgtttatttccaggtgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggttgtttaa 20701439  T
Q  323 taaaatttgccgtt 336  Q
    ||||||||| ||||    
T  20701438 taaaatttgtcgtt 20701425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 16180553 - 16180488
Alignment:
Q  266 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    ||||||| ||||  |||||| ||| |||||||||||||||| |||||| ||||| ||||||||||||    
T  16180553 ttgtattatctgtttcaccgatctttgttcgtcttgagcagagatctgattttt-aataaaatttgc 16180488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 4043387 - 4043342
Alignment:
Q  293 ttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaa 338  Q
    |||||||||||||| ||| || |||||||||||||||||| |||||    
T  4043387 ttcgtcttgagcagagatttgatttttaaataaaatttgctgttaa 4043342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 13098381 - 13098348
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||| |||||||||||||||||||||||    
T  13098381 tttaggtggtgatgtttattttggtgggtgttgt 13098348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 6e-49; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 111 - 329
Target Start/End: Complemental strand, 25594361 - 25594142
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    |||| |||||||||| || ||||||| || ||||||||| |||||||||||||   ||  ||||||||||||| ||||||||||||| ||| ||  || |    
T  25594361 gttttgtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgtcctcatgggtgttgaaggtatggtttggctagatgttgggtgcaagg 25594262  T
Q  211 gtgtctttt-atggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    |||| |||| |||||||||| ||||||||||||| |||||||||||| |||||   || ||||||||||||||||| |||||||| ||||||||||| ||    
T  25594261 gtgtttttttatggtgtttactttcgggtgttccgcctatatacgacgcattttatttttattctctgaatcaccgatctctgtttgtcttgagcagtga 25594162  T
Q  310 tctggtttttaaataaaatt 329  Q
    ||||||||||||||||||||    
T  25594161 tctggtttttaaataaaatt 25594142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 103 - 332
Target Start/End: Complemental strand, 823257 - 823028
Alignment:
Q  103 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgt 202  Q
    ||||| |||||| |||| |||||||| |||||||||| | ||| ||||||||||||| |||   ||  |||||||||||||||| |||  |||   ||||    
T  823257 cagtggttgttttgtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtcctcatgggtgttgaaggtaggggttgattaggggttgt 823158  T
Q  203 gtttaatggtgtctttt-atggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttg 301  Q
    || ||| |||||||||| |||||||||| ||| ||||||||| | |||||||||| | ||||  ||||| ||||||||||||||||||||||||||||||    
T  823157 gtgtaagggtgtctttttatggtgtttaattt-gggtgttccccttatatacgacgcctttaacttgtagtctctgaatcaccggtctctgttcgtcttg 823059  T
Q  302 agcagcgatctggtttttaaataaaatttgc 332  Q
    |||||||||||||||||| ||||||||||||    
T  823058 agcagcgatctggttttttaataaaatttgc 823028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 32010117 - 32010236
Alignment:
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 311  Q
    ||||||||| ||||||||||||| ||| |||| |||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||| || ||||    
T  32010117 tgtcttttaaggtgtttattttcaggtattccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatc 32010216  T
Q  312 tggtttttaaataaaatttg 331  Q
    ||||| ||||||||||||||    
T  32010217 tggttgttaaataaaatttg 32010236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 45354700 - 45354540
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 270  Q
    ||||||||||||||||||||||||| |  ||||| ||  ||||||||||||| ||||||||||||| | |||| ||| ||||| |||| ||||  |||||    
T  45354700 ggtgttgaaggtagggtttggctaggtgctgtgtgtaggggtgtcttttatgatgtttattttcggatattccgcctctatacaacacctttaatttgta 45354601  T
Q  271 ttctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    |||||| ||||| ||||||||| ||||||||||||  ||| | ||||||||||||||||||    
T  45354600 ttctctaaatcatcggtctctgctcgtcttgagcacggatatagtttttaaataaaatttg 45354540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 93 - 339
Target Start/End: Original strand, 27399195 - 27399446
Alignment:
Q  93 atatggtttacagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggc 192  Q
    |||| |||| ||||| | ||| ||||||||||  || |||||||| | |||||||||||||||||||||||   ||  |||||||||||| | | |||||    
T  27399195 atatcgttttcagtggtcgttgcgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctcatgggtgttgaaggtcgagcttggc 27399294  T
Q  193 tagatcttgtgtttaatggtgtcttttat----ggtgtttattttcgggtgttccacctatatacgaca-catttagattgtattctctgaatcaccggt 287  Q
    ||  | |||||| |||  |||||||||||    |||||||||||| ||||||| ||||||||||| ||  | ||||  ||||||| |||||||||  | |    
T  27399295 taagtgttgtgtgtaagtgtgtcttttatatatggtgtttatttttgggtgtttcacctatatacaacgtcttttaatttgtattttctgaatcatggtt 27399394  T
Q  288 ctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaaa 339  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| | ||||||    
T  27399395 ctctgtttgtcttgagcagggatctggattttaaataaaatttactgttaaa 27399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 46358135 - 46358014
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||||||||| ||||||||||||| |||||| | |||||||||  |   ||||| ||||||| |||||||| | |||||||||||||||||||||| ||    
T  46358135 ggtgtcttttaaggtgtttattttcaggtgtttcgcctatatacagcgtctttagtttgtattttctgaatctctggtctctgttcgtcttgagcaggga 46358036  T
Q  310 tctggtttttaaataaaatttg 331  Q
    ||||||| ||||||||||||||    
T  46358035 tctggttgttaaataaaatttg 46358014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 50518836 - 50518721
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||| | |||||||||| |  ||||| ||||||||||||||||||||| ||||   |    
T  50518836 ttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctgttcgtcttgagcagggatcaaat 50518737  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  50518736 tgtttaataaaatttg 50518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 40689524 - 40689392
Alignment:
Q  171 ggtgttgaaggtagggtttggc-tagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgt 269  Q
    |||||||||||||||||||||| ||||  |||||| ||| | ||||||||||| | |||||||| ||||||| | | ||||||| |||| ||||| ||||    
T  40689524 ggtgttgaaggtagggtttggcctagaagttgtgtgtaaggatgtcttttatgatatttatttttgggtgtttcgcttatatacaacacttttagtttgt 40689425  T
Q  270 attctctgaatcaccggtctctgttcgtcttga 302  Q
    | ||||| || ||||||||||||| ||||||||    
T  40689424 actctcttaaccaccggtctctgtccgtcttga 40689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 216 - 331
Target Start/End: Original strand, 4171078 - 4171193
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||| |||||||| |||||||||||| | ||| | |||||||||| |  ||||||||||||||||||||| ||||| ||| | ||    
T  4171078 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttagt 4171177  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||| ||||||    
T  4171178 tgtttaatagaatttg 4171193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 331
Target Start/End: Original strand, 14893264 - 14893379
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||| |||||||| |||||||||| |   ||| | ||||| |||| |  ||||| |||||||||| ||||||||||  |||||||    
T  14893264 ttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatctggt 14893363  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  14893364 tgtttaataaaatttg 14893379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 230 - 331
Target Start/End: Complemental strand, 33143685 - 33143584
Alignment:
Q  230 ttttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 329  Q
    |||||||||||||| |||||||| ||| | ||| | |||||||||| |  |||||| | | |||||| ||||||||| ||||||||| || |||||||||    
T  33143685 ttttcgggtgttccgcctatatatgacgccttttggttgtattctcagtttcaccgatttatgttcgccttgagcagagatctggttgtttaataaaatt 33143586  T
Q  330 tg 331  Q
    ||    
T  33143585 tg 33143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 25648017 - 25648133
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||||||||||||  ||||||||  | | ||| | |||||||||  |  |||||| |||||||||||||||| ||| |||  |||    
T  25648017 ttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctgttcgtcttgaacagggattaggt 25648116  T
Q  316 ttttaaataaaatttgc 332  Q
    | || ||| ||||||||    
T  25648117 tgtttaattaaatttgc 25648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 37123710 - 37123794
Alignment:
Q  222 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 306  Q
    ||||||||||||||||||||||  |||| || ||| | ||| | |||||||||| |  ||| ||||||| |||||||||||||||    
T  37123710 ggtgtttattttcgggtgttccgactatgtaggacgccttttgtttgtattctcagtttcatcggtctcagttcgtcttgagcag 37123794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 48893093 - 48892986
Alignment:
Q  223 gtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaa 322  Q
    |||||||||||||| |||||| | |||||||| ||   || | |||||||||| |  ||| | |||| |||||||||||||||| ||||| ||| || ||    
T  48893093 gtgtttattttcggatgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctgtctttgttcgtcttgagcagggatctagttgtttaa 48892994  T
Q  323 taaaattt 330  Q
    ||||||||    
T  48892993 taaaattt 48892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 30935127 - 30935014
Alignment:
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 311  Q
    |||||||  |||||||| |||||||||||| | | ||||||||||||  |||| ||||||| || | |  ||||||||||||||||||||  ||| || |    
T  30935127 tgtctttgttggtgtttgttttcgggtgtttcgcttatatacgacac-cttagtttgtattttcagtaagaccggtctctgttcgtcttgtacagagacc 30935029  T
Q  312 tggtttttaaataaa 326  Q
    || ||||||| ||||    
T  30935028 tgatttttaattaaa 30935014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 130 - 331
Target Start/End: Complemental strand, 25184953 - 25184754
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgttta 229  Q
    |||||||||| |||||||||||||||||||||||   ||   ||||||||||||||| |||||||| | |||||| ||  | ||||||||||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtcctcatgagtgttgaaggtagggcttggctaggtattgtgtgtatggatgtcttttatggtgttta 25184854  T
Q  230 ttttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 329  Q
     || |||||||||||||||||||||||   ||||| ||||| |||||||||||||||||||| || |||||||| || ||| |||||||| |||||||||    
T  25184853 ctt-cgggtgttccacctatatacgacgtttttagtttgtactctctgaatcaccggtctctttttgtcttgagtagggatttggttttt-aataaaatt 25184756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 210 - 339
Target Start/End: Complemental strand, 12197828 - 12197699
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||||||||| |||||||||||||  ||||||| |||||| ||||| | ||||| ||||||||||||| |||||| ||||| |||||||||||||  ||    
T  12197828 ggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcataga 12197729  T
Q  310 tctggtttttaaataaaatttgccgttaaa 339  Q
    ||| ||| ||||||||||||| | ||||||    
T  12197728 tctcgttgttaaataaaatttactgttaaa 12197699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 210 - 339
Target Start/End: Complemental strand, 12442256 - 12442127
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||||||||| |||||||||||||  ||||||| |||||| ||||| | ||||| ||||||||||||| |||||| ||||| |||||||||||||  ||    
T  12442256 ggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcataga 12442157  T
Q  310 tctggtttttaaataaaatttgccgttaaa 339  Q
    ||| ||| ||||||||||||| | ||||||    
T  12442156 tctcgttgttaaataaaatttactgttaaa 12442127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 130 - 331
Target Start/End: Complemental strand, 9831834 - 9831629
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgttta 229  Q
    ||||||||||||||||||||||| ||| |||||||  ||  ||||||||||||| |||| || ||| | |||||  ||  ||||| || ||||| |||||    
T  9831834 tttaggtggtaatgtttattttgatggatgttgttttcatgggtgttgaaggtatggttgggttaggtgttgtg--taggggtgttttgtatggagttta 9831737  T
Q  230 ttttcgggtgttccacctatatacgacacatttagattgtatt-----ctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttt-taaat 323  Q
    |||||||||| ||  ||||||||||||   ||||| |||||||     |||||||||||||  |||| ||||| |||||||  |||||| |||| |||||    
T  9831736 ttttcgggtggtcggcctatatacgacgtctttagtttgtattctctgctctgaatcaccgacctctattcgttttgagcaaagatctgattttctaaat 9831637  T
Q  324 aaaatttg 331  Q
    ||||||||    
T  9831636 aaaatttg 9831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 15906998 - 15907105
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 270  Q
    |||||||||||||||||| |||||| | |||||| ||  ||||| || | ||| ||||||| |||| || ||| |||||||||||  | ||||| |||||    
T  15906998 ggtgttgaaggtagggttgggctaggtgttgtgtgtaggggtgttttgtttggagtttattgtcggatgctccgcctatatacgatgcctttagtttgta 15907097  T
Q  271 ttctctga 278  Q
    ||||||||    
T  15907098 ttctctga 15907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 2613250 - 2613178
Alignment:
Q  260 tttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    ||||| ||||||||||||||| |||  ||| | ||||||||||| || |||||| || |||||||||||||||    
T  2613250 tttagtttgtattctctgaatgaccaatctatattcgtcttgagtagggatctgattgttaaataaaatttgc 2613178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 8843830 - 8843745
Alignment:
Q  245 cctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    |||||||||| | ||||| | ||||||| ||||  |||||||||||||||||||||||| || ||| || ||||| ||||||||||||    
T  8843830 cctatatacggcgcatttcgtttgtatt-tctgtttcaccggtctctgttcgtcttgagaagggatttgattttt-aataaaatttgc 8843745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 10248378 - 10248327
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 163  Q
    ||||||||||||||||| |||||||||| | || |||||||| |||||||||    
T  10248378 tttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgt 10248327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 22325772 - 22325734
Alignment:
Q  293 ttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    |||||||||||||||||||||||| || |||||||||||    
T  22325772 ttcgtcttgagcagcgatctggttatttaataaaatttg 22325734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 115 - 327
Target Start/End: Complemental strand, 843 - 631
Alignment:
Q  115 cgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgt 214  Q
    |||||| |||| || |||||||||| |||||||||||||||  ||||||   ||  ||||||||||||| | ||||||||| | |||||| ||  | |||    
T  843 cgtgaaagagtctgttttaggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgt 744  T
Q  215 cttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||   ||||| |||||||||||||||||| | ||| ||||||||||||||   ||||  |    
T  743 cttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcacggatctttgttcgtcttgagctcggatcgag 644  T
Q  315 tttttaaataaaa 327  Q
    |||||||||||||    
T  643 tttttaaataaaa 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 115 - 327
Target Start/End: Complemental strand, 38544564 - 38544352
Alignment:
Q  115 cgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgt 214  Q
    |||||| |||| || |||||||||| |||||||||||||||  ||||||   ||  ||||||||||||| | ||||||||| | |||||| ||  | |||    
T  38544564 cgtgaaagagtctgttttaggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgt 38544465  T
Q  215 cttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||   ||||| |||||||||||||||||| | ||| ||||||||||||||   ||||  |    
T  38544464 cttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcacggatctttgttcgtcttgagctcggatcgag 38544365  T
Q  315 tttttaaataaaa 327  Q
    |||||||||||||    
T  38544364 tttttaaataaaa 38544352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 171 - 306
Target Start/End: Complemental strand, 41126243 - 41126108
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 270  Q
    ||||||||||||||||| ||||||  | |||||| ||  ||||||||||||  ||||||||||||||||||| ||||||||||||  | ||||| |||||    
T  41126243 ggtgttgaaggtagggtatggctatgtgttgtgtgtaggggtgtcttttataatgtttattttcgggtgttctacctatatacgatgcctttagtttgta 41126144  T
Q  271 ttctctgaatcaccggtctctgttcgtcttgagcag 306  Q
    |||||||||||| |||||||||||||||||||||||    
T  41126143 ttctctgaatcatcggtctctgttcgtcttgagcag 41126108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 38546930 - 38546815
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||||||  ||||  ||    
T  38546930 ttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgtactctctgaatcactgatctttgttcgtcttgagcaatgatcgagt 38546831  T
Q  316 ttttaaataaaatttg 331  Q
    ||||||||||||||||    
T  38546830 ttttaaataaaatttg 38546815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 9313087 - 9312972
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||||||||||||| |||||||||||| | ||| ||||||||| |  |  ||||||||||||||||||||||||||| ||||| ||    
T  9313087 ttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagagatctcgt 9312988  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  9312987 tgtttaataaaatttg 9312972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 27905760 - 27905880
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||| | | ||| ||||| ||||||| |||||||||||| ||| |||||||||| ||    
T  27905760 ggtgtcttttatggtgtttattttttg-tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctctattcttcttgagcaggga 27905858  T
Q  310 tctggtttttaaataaaatttg 331  Q
    ||||||| || |||||| ||||    
T  27905859 tctggttgtttaataaattttg 27905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 27102516 - 27102632
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||||||||||||| |||||||||| ||| ||| | |||||||||| |  ||||| |||| |||||||||||| ||| ||||||||    
T  27102516 ttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctcaggttcaccagtctttgttcgtcttgaacagagatctggt 27102615  T
Q  316 ttttaaataaaatttgc 332  Q
    | || ||||||||||||    
T  27102616 tgtttaataaaatttgc 27102632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 111 - 320
Target Start/End: Original strand, 17033838 - 17034032
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    |||||||||| |||| || |||||||||||||||||||||| |||| ||||||   ||| |||||||||||||||||||| |||| | |||||| ||       
T  17033838 gtttcgtgaaagagtatgttttaggtggtaatgtttattttcgtggatgttgtccccaggggtgttgaaggtagggtttgactagttgttgtgtgta--- 17033934  T
Q  211 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
                | | ||||||||||||||||| | |||||||||| | ||| | ||||||| |||||||||||||||| ||||| |||||||||  |||    
T  17033935 ------------ggggttattttcgggtgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtctatgttcatcttgagcatagat 17034022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 37200485 - 37200565
Alignment:
Q  225 gtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagca 305  Q
    |||||||||||| |||||| |||||||||||    ||||| |||||||||| | |||||||||||||||||||||||||||    
T  37200485 gtttattttcggatgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtcttgagca 37200565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 32882695 - 32882820
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||||||||| |||||||||||||||||||||  |||||||||| | | ||||| ||||||| ||||| || | |   |||||||||||||||||| ||    
T  32882695 ggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcctttagtttgtattttctgattc-cag---tctgttcgtcttgagcaggga 32882790  T
Q  310 tctggtttttaaataaaatttgccgttaaa 339  Q
    | || || || |||||||||||| ||||||    
T  32882791 tgtgattgtttaataaaatttgctgttaaa 32882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 331
Target Start/End: Original strand, 34775206 - 34775320
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||||||||||||| |||||||||| | | ||||| |||||||||| |  | | |||||| |||||||||||||||| || ||| |    
T  34775206 ttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattctcagctttatcggtctttgttcgtcttgagcag-gacctgat 34775304  T
Q  316 ttttaaataaaatttg 331  Q
      ||||||||||||||    
T  34775305 gattaaataaaatttg 34775320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 32863288 - 32863234
Alignment:
Q  221 tggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctc 275  Q
    |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  32863288 tggtgtttattttcaggtgttccgcctatatacgacacatttagtttgtattctc 32863234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 49820489 - 49820606
Alignment:
Q  216 ttttatggtgtttattttc-gggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 314  Q
    ||||||||||||||||||| ||||||||| |||| ||| |||   ||| | ||||||||||||| |||||| ||||| |  ||||||||||| |||| |     
T  49820489 ttttatggtgtttattttccgggtgttccgcctacatatgacgtctttggtttgtattctctgattcaccgatctctatctgtcttgagcagagatcaga 49820588  T
Q  315 tttttaaataaaatttgc 332  Q
    || |||||||||||||||    
T  49820589 ttgttaaataaaatttgc 49820606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 30762073 - 30762013
Alignment:
Q  279 atcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaaa 339  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||||||| ||||||    
T  30762073 atcacctgtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctgttaaa 30762013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 339
Target Start/End: Original strand, 42374414 - 42374637
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    ||||||||||||| |||| |||||||||| |||||||| |||||||| |||||   ||  |||||||||| || | ||||  ||| |  ||||| ||       
T  42374414 gtttcgtgaaggaatttgttttaggtggtgatgtttatcttggtgggggttgtccccaagggtgttgaagttatgctttgattaggtgctgtgtgtacga 42374513  T
Q  211 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
    ||||| |||||| |||||||||||||||||||| |||||||| | | |  || | ||||| |||  ||||||||||||||| ||||||||||||||  ||    
T  42374514 gtgtc-tttatgatgtttattttcgggtgttccgcctatatatggcgccctttgtttgta-tct-ggaatcaccggtctctattcgtcttgagcag-aat 42374609  T
Q  311 ctggtttttaaataaaatttgccgttaaa 339  Q
    |||| |||| ||||| ||||| |||||||    
T  42374610 ctggatttt-aataatatttgtcgttaaa 42374637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 11439767 - 11439652
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||||| ||||||  ||||||| | | | ||| | ||||||||||    |||||| ||| |||||||||||||||| ||||||||    
T  11439767 ttttagggtgtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggt 11439668  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  11439667 tgtttaataaaatttg 11439652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 26602550 - 26602457
Alignment:
Q  236 ggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    ||||||||  |||||||| |||| ||| | |||| ||||| |||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||    
T  26602550 ggtgttccgtctatatacaacactttttgtttgttttctccgaatcaccggtctctgttggtcttgagcag-gatcgggttttt-aataaaatttg 26602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 46603691 - 46603809
Alignment:
Q  213 gtcttttatggtgttt-attttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 311  Q
    |||||||||| ||||| ||||||||||||||| ||||||||| ||   ||| | ||||||| |||||| ||||||||| | ||||||||||| || ||||    
T  46603691 gtcttttatgatgttttattttcgggtgttccgcctatatacaacgtcttttgtttgtattatctgaaccaccggtctttattcgtcttgagtagggatc 46603790  T
Q  312 tggtttttaaataaaatttg 331  Q
    |  ||||| |||||||||||    
T  46603791 tcattttt-aataaaatttg 46603809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 16577573 - 16577643
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgtt 241  Q
    ||||||||| ||||||| || |||||| |||||| ||  ||||||||||||| ||||||||||||||||||    
T  16577573 ggtgttgaaagtagggtatgactagatgttgtgtgtaggggtgtcttttatgatgtttattttcgggtgtt 16577643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 376547 - 376463
Alignment:
Q  222 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 306  Q
    ||||||||||||| |||||||  |||||||||| | | ||||  ||||||||||||  ||| | |||||||||||||||||||||    
T  376547 ggtgtttattttcaggtgttctgcctatatacggcgcctttactttgtattctctgtttcatccgtctctgttcgtcttgagcag 376463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 331
Target Start/End: Original strand, 9557241 - 9557357
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgtt-cgtcttgagcagcgatctgg 314  Q
    ||||| |||||||||||||||||||| |   |||||||||    |||   |||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  9557241 ttttaaggtgtttattttcgggtgtttcgtttatatacgatgttttttatttgtattctcagattcaccggtctctgtttcgtcttgagcagagatctgg 9557340  T
Q  315 tttttaaataaaatttg 331  Q
    || || || ||||||||    
T  9557341 ttgtttaacaaaatttg 9557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 10605082 - 10605145
Alignment:
Q  269 tattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    |||||||||  ||||| |||||| |||||||||||||| |||||| || |||||||||||||||    
T  10605082 tattctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgc 10605145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 52278617 - 52278714
Alignment:
Q  217 tttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtt 316  Q
    |||| ||||||||||||| |||||||| |||||||| | | |  |||| ||||||||||||  ||| | ||||||||||||||||||||| |||||||||    
T  52278617 tttaaggtgtttattttcaggtgttccgcctatatatggcgc-cttagcttgtattctctgtttca-cagtctctgttcgtcttgagcagggatctggtt 52278714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 7451958 - 7451892
Alignment:
Q  266 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    |||||||||| |  ||||||||||||||||||||||||||| ||||| ||| || ||||| ||||||    
T  7451958 ttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgc 7451892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 331
Target Start/End: Complemental strand, 18845070 - 18844913
Alignment:
Q  173 tgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtatt 272  Q
    ||||||||||||||| ||||||| | || ||| ||  || ||||||| || ||||||||||||| | ||||  ||||| ||||| | ||| | |||||||    
T  18845070 tgttgaaggtagggtgtggctaggtgttatgtgtaggggggtcttttttgatgtttattttcggatattccgtctatacacgacgccttttgtttgtatt 18844971  T
Q  273 ctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
     ||| ||| | | |||| ||||||| ||||| || |||| ||||||| |||||||||||    
T  18844970 atctcaattatcagtctatgttcgttttgagtagggatccggttttt-aataaaatttg 18844913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 10785214 - 10785093
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||| ||||| ||||||||| || |||||||||  || | |||| |   ||||| |||||||||| |  | ||| |||||| |||||||||||||| ||    
T  10785214 ggtgttttttaaggtgtttatatttgggtgttccgactttgtacggcgtttttagtttgtattctcagttttacccgtctctattcgtcttgagcaggga 10785115  T
Q  310 tctggtttttaaataaaatttg 331  Q
    ||||||| |||||| |||||||    
T  10785114 tctggttgttaaatgaaatttg 10785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 26602669 - 26602568
Alignment:
Q  103 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgt 202  Q
    ||||| |||||| ||||| |||| ||  ||||||||| |||||||||||  ||||||||||   | | | ||||||||||||||||||||||| | ||||    
T  26602669 cagtggttgttttgtgaatgagtctgtgttaggtggtgatgtttattttcatgggtgttgtcctcggggttgttgaaggtagggtttggctaggtgttgt 26602570  T
Q  203 gt 204  Q
    ||    
T  26602569 gt 26602568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 27431411 - 27431351
Alignment:
Q  276 tgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgtt 336  Q
    |||||||||| |||||||| ||||||||||| ||||| |||| || ||||||||| |||||    
T  27431411 tgaatcaccgatctctgttagtcttgagcagggatctcgtttgtagataaaattttccgtt 27431351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 37200362 - 37200422
Alignment:
Q  103 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 163  Q
    ||||| |||||||||| | ||| ||| |||||||||| ||||||||||| |||||||||||    
T  37200362 cagtggttgtttcgtggaagagcttgttttaggtggtgatgtttattttagtgggtgttgt 37200422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 38548889 - 38548838
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttg 162  Q
    |||||||||| |||| || |||||||||| |||||||||||||||| |||||    
T  38548889 gtttcgtgaaagagtctgttttaggtggtgatgtttattttggtggatgttg 38548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 16149106 - 16149148
Alignment:
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacg 254  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||    
T  16149106 tgtcttttagggtgtttattttcgcgtgttccgcctatatacg 16149148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 16577529 - 16577579
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttg 162  Q
    ||||||||| |||| || |||||||| | ||||||||||||||||||||||    
T  16577529 tttcgtgaaagagtctgttttaggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 8e-36; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 111 - 331
Target Start/End: Complemental strand, 22884964 - 22884746
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    ||||||||||||||| || |||||||||| ||||||  ||| |||||||||||   ||  |||||||||||| ||||| |||||| |  | ||  ||  |    
T  22884964 gtttcgtgaaggagtctgttttaggtggtgatgttt--tttagtgggtgttgtccacatgggtgttgaaggttgggttgggctaggtgctatgagtaggg 22884867  T
Q  211 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
    |||| || ||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||||||  |||  |||||| |||||||||||||||| |||    
T  22884866 gtgttttgtatggagtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctctatatcgtcggtctttgttcgtcttgagcagagat 22884767  T
Q  311 ctggtttttaaataaaatttg 331  Q
     ||||||||||||||||||||    
T  22884766 ttggtttttaaataaaatttg 22884746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 171 - 331
Target Start/End: Original strand, 20572362 - 20572521
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 270  Q
    ||||||||||||||||| ||  ||  | |||||| ||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||| | || ||    
T  20572362 ggtgttgaaggtagggtatgagtaagtgttgtgtgtaggggtgtcttttatggtgtttatttt-gagtgtttcacctatatacgacacattttgtttcta 20572460  T
Q  271 ttctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    |||||||||||| |||||||||||||| ||||| || ||| ||||||||||||||||||||    
T  20572461 ttctctgaatcatcggtctctgttcgttttgaggagagatgtggtttttaaataaaatttg 20572521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 111 - 332
Target Start/End: Complemental strand, 25504739 - 25504520
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgtt-gttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaat 209  Q
    |||||||||| || | || |||||||||| ||||||||||||||||||||| ||   ||| |||||||||||| ||||||| |||| | |||||| ||      
T  25504739 gtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtttgtcatcaggggtgttgaaggtggggtttgactaggtgttgtgtgtagg 25504640  T
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    || ||||||| ||||||||||||| ||||||| |  ||||||||| | | ||| | |||||||||||||||||||||| |||||| ||||||||||| ||    
T  25504639 gg-gtctttt-tggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcaggga 25504542  T
Q  310 tctggtttttaaataaaatttgc 332  Q
    |||| ||||| ||||||||||||    
T  25504541 tctgattttt-aataaaatttgc 25504520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 219 - 330
Target Start/End: Original strand, 27740325 - 27740435
Alignment:
Q  219 tatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttt 318  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||| || ||| ||||||||||||||||  ||||||||||    
T  27740325 tatggagtttattttcgggtgttccacctatatacgacgcctttagtttgtattatctgaatcatcgatctttgttcgtcttgagcag-aatctggtttt 27740423  T
Q  319 taaataaaattt 330  Q
    ||||||||||||    
T  27740424 taaataaaattt 27740435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 179 - 330
Target Start/End: Original strand, 2063175 - 2063327
Alignment:
Q  179 aggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctg 277  Q
    |||||||||||| |||| | |||||| ||  | |||||||||||||||||||||| |||||||| | |||||||||| ||| ||| | |||||||| |||    
T  2063175 aggtagggtttgactaggtgttgtgtgtagggatgtcttttatggtgtttatttttcgggtgtttcgcctatatacggcacctttcgtttgtattcgctg 2063274  T
Q  278 aatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaattt 330  Q
    ||| |||||||  |||| ||||||||||| ||||  |||||||||||||||||    
T  2063275 aattaccggtcgatgtttgtcttgagcagagatcgagtttttaaataaaattt 2063327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 13337584 - 13337671
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgag 303  Q
    ||||| ||||||||||||| ||||||||||||||||||||| | ||| | ||||||||||||  ||||||||||||||||||||||||    
T  13337584 ttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctgttcgtcttgag 13337671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 228 - 331
Target Start/End: Original strand, 29487447 - 29487548
Alignment:
Q  228 tattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaa 327  Q
    ||||||| |||||||| |||||||||| | | ||||| ||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  29487447 tattttcaggtgttccgcctatatacggctcctttag-ttgtattctatgaatcaccggtctctgttcatcttgagcagggatctggttttt-aataaaa 29487544  T
Q  328 tttg 331  Q
    ||||    
T  29487545 tttg 29487548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 33788362 - 33788257
Alignment:
Q  226 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataa 325  Q
    |||||||||||||||||| | |||||||| | | ||||| |||||||||| | |||||||||||||||||||||| ||||| ||| ||| ||||||||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctttagcagagatttgg-ttttaaataa 33788264  T
Q  326 aatttgc 332  Q
    |||||||    
T  33788263 aatttgc 33788257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 10173328 - 10173211
Alignment:
Q  214 tcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctg 313  Q
    ||||||| ||||||||||||| |||||||| ||||||||| || | ||||| ||||||| | ||  |||||| ||||||||||||||||||||  |||||    
T  10173328 tcttttagggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcaggaatctg 10173229  T
Q  314 gtttttaaataaaatttg 331  Q
    ||| |||| |||||||||    
T  10173228 gttgttaagtaaaatttg 10173211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 109 - 298
Target Start/End: Complemental strand, 24308568 - 24308375
Alignment:
Q  109 ttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcag----tg-gtgttgaaggtagggtttggctagatcttgtg 203  Q
    ||||||| |||| || |||| |||||||| | ||||||||||||||||||||||| | ||     || |||||||| |||||||||| |||| | || ||    
T  24308568 ttgtttcatgaaagaatttgttttaggtgatgatgtttattttggtgggtgttgtcgtcatcagatgagtgttgaaagtagggtttgactaggtattctg 24308469  T
Q  204 tttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtc 298  Q
    | ||  ||||||||||||| |||||| ||| | ||||||| | |||||||||  | ||||| ||||||||||| |||||||||||||||||||||    
T  24308468 tgtag-ggtgtcttttatgatgtttacttttgagtgttcctcatatatacgatgcttttagtttgtattctctaaatcaccggtctctgttcgtc 24308375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 44593969 - 44594116
Alignment:
Q  173 tgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtatt 272  Q
    ||||||||||||||| ||||||| | || ||| ||  || ||||||| |||||||||||||||| | ||||| ||||| ||||| | ||| | |||||||    
T  44593969 tgttgaaggtagggtgtggctaggtgttatgtgtaggggggtcttttttggtgtttattttcggatattccatctatacacgacgccttttgtttgtatt 44594068  T
Q  273 ctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttta 320  Q
    |||||||| | | |||| ||||||| ||||| || |||||||||||||    
T  44594069 ctctgaattatcagtctatgttcgttttgagtagggatctggttttta 44594116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 4472277 - 4472393
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||||||||||||||||||| ||||||  ||||||||||| | ||||| ||||||||||||| ||||||  |||||||| |||||| | | |||| | |    
T  4472277 ttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattcaccgaactctgttcatcttgaacggggatcagat 4472376  T
Q  316 ttttaaataaaatttgc 332  Q
    | || ||||||||||||    
T  4472377 tgttgaataaaatttgc 4472393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 4975085 - 4975194
Alignment:
Q  222 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaa 321  Q
    |||||||||||||||||||||  |||||||||||| | ||||| |||||||||  |  ||||  ||||||||||||||||||||| || ||| |  ||||    
T  4975085 ggtgtttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaa 4975184  T
Q  322 ataaaatttg 331  Q
    ||||||||||    
T  4975185 ataaaatttg 4975194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 4992993 - 4993102
Alignment:
Q  222 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaa 321  Q
    |||||||||||||||||||||  |||||||||||| | ||||| |||||||||  |  ||||  ||||||||||||||||||||| || ||| |  ||||    
T  4992993 ggtgtttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaa 4993092  T
Q  322 ataaaatttg 331  Q
    ||||||||||    
T  4993093 ataaaatttg 4993102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 112 - 289
Target Start/End: Complemental strand, 16952194 - 16952018
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatgg 211  Q
    ||||||||||| || || |||| ||||| |||||||||||| |||||||||| | ||  |||||||||||||||   || |||| | |||||| ||   |    
T  16952194 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 16952096  T
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 289  Q
    ||||||||||| |||||||||| || |||||  ||||||||||||   | ||| ||||||||||| ||||||| ||||    
T  16952095 tgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacctgtct 16952018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 112 - 289
Target Start/End: Complemental strand, 17022859 - 17022683
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatgg 211  Q
    ||||||||||| || || |||| ||||| |||||||||||| |||||||||| | ||  |||||||||||||||   || |||| | |||||| ||   |    
T  17022859 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 17022761  T
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 289  Q
    ||||||||||| |||||||||| || |||||  ||||||||||||   | ||| ||||||||||| ||||||| ||||    
T  17022760 tgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacctgtct 17022683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 30965986 - 30965919
Alignment:
Q  272 tctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaaa 339  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||| | ||||||    
T  30965986 tctctgaatcaccggtctttgttcgtcttgagtagggatctggtttttaaataaatttttctgttaaa 30965919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 13699116 - 13698999
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    ||||||| || |||| || |||||||||| ||||||||||||||||||||| |   ||| ||||||||||||||||||||  ||||| || ||||||  |    
T  13699116 gtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttatcttcaggggtgttgaaggtagggtttgattagatgttatgtttaggg 13699017  T
Q  211 gtgtcttttatggtgttt 228  Q
    |  |||| ||||||||||    
T  13699016 ggatcttatatggtgttt 13698999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 7696295 - 7696411
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||| ||||||||| ||||||||||   | ||| | ||||||||||    ||| |||||||||||| |||||||||| ||| ||||    
T  7696295 ttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttgtattctcaatttcatcggtctctgttcatcttgagcagggatttggt 7696394  T
Q  316 ttttaaataaaatttgc 332  Q
    | || ||||||||||||    
T  7696395 tgttcaataaaatttgc 7696411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 8793495 - 8793564
Alignment:
Q  260 tttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 329  Q
    ||||| ||||||| ||| |||||||||||| ||||||| || ||||| |||||||||| |||||||||||    
T  8793495 tttagtttgtattttctaaatcaccggtctttgttcgtttttagcagagatctggtttataaataaaatt 8793564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 6173970 - 6173851
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||||| || |||||||| |||| |||||||||||||||||||||    ||||| ||||| | || | | ||| |||||| |||||||||| |||| ||    
T  6173970 ggtgtctcttttggtgtttgtttttgggtgttccacctatatacgatgtctttagtttgtactttccgtaacactggtctcagttcgtcttgtgcagaga 6173871  T
Q  310 tctggtttttaaataaaattt 330  Q
    |||| ||||| ||||||||||    
T  6173870 tctgattttt-aataaaattt 6173851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 7696231 - 7696282
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 163  Q
    ||||||||||||||||  |||||||||| |||| ||||||||||||||||||    
T  7696231 tttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttgt 7696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 33533427 - 33533376
Alignment:
Q  280 tcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    ||||| ||||||||||||||||||||| ||||||| | ||||||||||||||    
T  33533427 tcaccagtctctgttcgtcttgagcagagatctggctgttaaataaaatttg 33533376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 33788470 - 33788385
Alignment:
Q  103 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtt 188  Q
    ||||| |||||||||| |||||  || ||||||||| |||||||||||| |||||||||||   ||  |||||||||||| |||||    
T  33788470 cagtggttgtttcgtggaggagcctgttttaggtggcaatgtttattttagtgggtgttgtactcatgggtgttgaaggttgggtt 33788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 37770397 - 37770285
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||||||||||||| |||||||||||| |   | | ||||||||||  | |||||| |||||||| ||||||| ||  ||||| |     
T  37770397 ttttagggtgtttattttcgggtgttccgcctatatacgacgc---ttgtttgtattctcatattcaccgatctctgtttgtcttgatcatggatctagc 37770301  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  37770300 tgttcaataaaatttg 37770285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 41113493 - 41113401
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttga 302  Q
    ||||| ||||| ||| ||||||||||| |||||| ||||||||| |    ||||| |||||||||| |  |||||||||||| ||||||||||    
T  41113493 ggtgttttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctcttttcgtcttga 41113401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 41113549 - 41113502
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtg 159  Q
    |||||||||||||| || ||||||| |||| |||||||||||||||||    
T  41113549 tttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtg 41113502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 331
Target Start/End: Original strand, 15361059 - 15361172
Alignment:
Q  218 ttatggtgtttattttc-gggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtt 316  Q
    ||||||||||||||||  ||||||| |  ||||||||| | | ||| | ||||||| ||||  ||||| |||||| |||||||||||||| ||| || ||    
T  15361059 ttatggtgtttattttttgggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttcaccagtctctattcgtcttgagcagggatttgatt 15361158  T
Q  317 tttaaataaaatttg 331  Q
    ||| |||||||||||    
T  15361159 ttt-aataaaatttg 15361172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 15126240 - 15126187
Alignment:
Q  111 gtttcgtgaaggagtttggttt-aggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||| ||||||| ||| ||||||| |||||||||||||||||| ||||    
T  15126240 gtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgt 15126187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 15360986 - 15361019
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||| |||||||||||||||||||||||    
T  15360986 tttaggtggtgatgtttattttggtgggtgttgt 15361019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 17060165 - 17060093
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagg 185  Q
    ||||||||||| || || |||| ||||| ||||||||||| ||||||||||| | ||  |||||||||||||||    
T  17060165 tttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtagg 17060093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 37559800 - 37559905
Alignment:
Q  226 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataa 325  Q
    |||||| |||||||||||  || | ||||  || ||||| ||||||||||    |||||| |||||||||||||| | ||| |||||  |||||||||||    
T  37559800 tttattctcgggtgttccgtctttgtacggaacctttagtttgtattctcaatttcaccgatctctgttcgtcttaaacagggatctcatttttaaataa 37559899  T
Q  326 aatttg 331  Q
    ||||||    
T  37559900 aatttg 37559905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 111 - 332
Target Start/End: Original strand, 8731168 - 8731387
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgtt-gttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaat 209  Q
    |||||||||| || | || |||||||||| ||||||||||||||||||||| ||   ||| |||||||||||| ||||||| |||| | |||||| ||      
T  8731168 gtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtttgtcatcaggggtgttgaaggtggggtttgactaggtgttgtgtgtagg 8731267  T
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    || ||||||| ||||||||||||| ||||||| |  ||||||||| | | ||| | |||||||||||||||||||||| |||||| ||||||||||| ||    
T  8731268 gg-gtctttt-tggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcaggga 8731365  T
Q  310 tctggtttttaaataaaatttgc 332  Q
    |||| ||||| ||||||||||||    
T  8731366 tctgattttt-aataaaatttgc 8731387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 23426646 - 23426750
Alignment:
Q  228 tattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaa 327  Q
    |||||||||||||||| |||||||||| ||| |||   |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaa 23426745  T
Q  328 tttgc 332  Q
    |||||    
T  23426746 tttgc 23426750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 171 - 306
Target Start/End: Complemental strand, 24072053 - 24071918
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 270  Q
    |||||||||||||||||||| |||| | ||  || ||  ||||||||||||| |||||||||||||||||||| |||||||||| | |  |||| |||||    
T  24072053 ggtgttgaaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgtttattttcgggtgttccgcctatatacggcgcccttagtttgta 24071954  T
Q  271 ttctctgaatcaccggtctctgttcgtcttgagcag 306  Q
    || ||||||||| |||||| |||| ||||| |||||    
T  24071953 ttatctgaatcatcggtctttgtttgtcttaagcag 24071918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 26405295 - 26405180
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||||||||||||  ||||||||||| | ||| | |||||||||| |  |||||||||| ||||||||||||||||  |||||||    
T  26405295 ttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtctttgttcgtcttgagcagaaatctggt 26405196  T
Q  316 ttttaaataaaatttg 331  Q
    | || |||||||||||    
T  26405195 tgtttaataaaatttg 26405180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 17853194 - 17853111
Alignment:
Q  248 atatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    ||||||| | ||||||| ||||||| |||||||||||||| | | ||| |||||||||| ||||||||||||||||||||||||    
T  17853194 atatacggcgcatttagtttgtattttctgaatcaccggtttatattcatcttgagcagggatctggtttttaaataaaatttg 17853111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 25992335 - 25992451
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||| ||||||||||| | |||||||| | | ||| | ||||||| ||    ||||||||||||||||||||||||||| ||||||||    
T  25992335 ttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatctggt 25992434  T
Q  316 ttttaaataaaatttgc 332  Q
    | || ||||| ||||||    
T  25992435 tgtttaataatatttgc 25992451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 332
Target Start/End: Complemental strand, 13953995 - 13953877
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaat--caccggtctctgttcgtcttgagcagcgatctg 313  Q
    ||||| ||||||||||||| |||||||| |||||||||| | | ||||| ||||| |||| |  |  |||||||||||||||||||||||||| || |||    
T  13953995 ttttaaggtgtttattttcaggtgttccgcctatatacggcgcctttagtttgtactctcagtttcacaccggtctctgttcgtcttgagcagagacctg 13953896  T
Q  314 gtttttaaataaaatttgc 332  Q
    |   |||||||||||||||    
T  13953895 gaggttaaataaaatttgc 13953877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 17853884 - 17853753
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    ||||||| ||||||| || |||||  ||| ||||||||||||||||||||| |   ||  |||| |||||||||||||||||||| | |||||  ||  |    
T  17853884 gtttcgtaaaggagtctgttttagaaggtgatgtttattttggtgggtgttttcctcatgggtggtgaaggtagggtttggctaggtgttgtgagtatgg 17853785  T
Q  211 gtgtcttttatggtgtttattttcgggtgttcc 243  Q
     ||| |||||||||||||| |||||||||||||    
T  17853784 atgttttttatggtgttta-tttcgggtgttcc 17853753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 8297805 - 8297927
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||| ||||||| |||||||| ||||| ||| || | |||   |||||||||| |  |||||||||||||||||||||||| || |||||| |    
T  8297805 ttttagggtgtgtattttcaggtgttccgcctatgtacaacgccttttt-ttgtattctcagtttcaccggtctctgttcgtcttgagtagagatctgat 8297903  T
Q  316 ttttaaataaaatttgccgttaaa 339  Q
    | || |||||||||||| ||||||    
T  8297904 tgttcaataaaatttgctgttaaa 8297927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 30097667 - 30097757
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 306  Q
    ||||| |||||||||||||||||||||| |||||||||| |   ||||| ||||||||| | | | |||||||| |||||||||| |||||    
T  30097667 ttttagggtgtttattttcgggtgttccgcctatatacggcgtctttagtttgtattctttaatttaccggtctttgttcgtcttaagcag 30097757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 31742504 - 31742611
Alignment:
Q  222 ggtgtttattttcgggtgttccacctatatacgacacatttagattgta-ttctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttta 320  Q
    ||||||| |||||||||||||| |||||||||| | | ||| | ||||| |||| || | ||||||||||||||||||||| |||| |||| |||||||     
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgtacttct-tgtaacaccggtctctgttcgtcttgtgcagggatcaggttttt- 31742601  T
Q  321 aataaaattt 330  Q
    ||||||||||    
T  31742602 aataaaattt 31742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 27713406 - 27713512
Alignment:
Q  216 ttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 314  Q
    |||||||| ||||||||| |||||||||| |||||||| | | | ||| | |||||| ||| |  |||| |||||| ||||||||||| ||| |||||||    
T  27713406 ttttatggagtttatttttcgggtgttccgcctatatatggcgcctttcgtttgtatcctcagtttcactggtctcagttcgtcttgaacagggatctgg 27713505  T
Q  315 tttttaa 321  Q
    |||||||    
T  27713506 tttttaa 27713512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 332
Target Start/End: Complemental strand, 7195048 - 7194932
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||| || |||||| | |||| ||||| ||||| |  | ||||||| |  ||| || ||| ||||||||||||| || ||||||||    
T  7195048 ttttagggtgtttatttttggatgttccgcatataaacgactcattttgtctatattctcagtttcatcgatctttgttcgtcttgagtagggatctggt 7194949  T
Q  316 ttttaaataaaatttgc 332  Q
    | || ||||||||||||    
T  7194948 tgtttaataaaatttgc 7194932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 30097602 - 30097653
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||||||| || |||||||||| | || ||||||||||||||||||    
T  30097602 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgt 30097653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 26045710 - 26045596
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| |||||||||||| || ||||||  ||||||||| | | ||| | |||||| |||    |||||||||||||||||| |||||||  ||||| ||    
T  26045710 ttttagggtgtttatttttggatgttccgtctatatacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttgagcattgatctagt 26045611  T
Q  316 ttttaaataaaattt 330  Q
    | || ||||||||||    
T  26045610 tgtttaataaaattt 26045596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 33258636 - 33258598
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacg 254  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  33258636 ttttatggtgtttattttcgggtgtttcacatatatacg 33258598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 39184016 - 39183939
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtt 188  Q
    |||||||||  |||| || |||||||||| || |||||||| |||||||||||   ||  ||||||||||||||||||    
T  39184016 gtttcgtgatagagtctgttttaggtggtgatctttattttagtgggtgttgtcctcaagggtgttgaaggtagggtt 39183939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 117 - 332
Target Start/End: Complemental strand, 31409807 - 31409591
Alignment:
Q  117 tgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtct 216  Q
    ||||||||| || |||| ||| | ||||||||||||| |||||||||   ||  | |||| ||| || || |||||||| | |||||  || ||||||||    
T  31409807 tgaaggagtctgttttatgtgatgatgtttattttggagggtgttgtcctcatggatgttaaagatatggattggctaggtgttgtgggtagtggtgtct 31409708  T
Q  217 tttatggtgtttattttcgggtgttccacctatatacgaca-catttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    || |||||||||||||||  |||||||||||||||||| || | ||||| ||||||| ||| ||||| | |||||| || ||||||||||| ||||||||    
T  31409707 ttaatggtgtttattttcatgtgttccacctatatacgccatcttttagcttgtattatcttaatcatcagtctctttttgtcttgagcagagatctggt 31409608  T
Q  316 ttttaaataaaatttgc 332  Q
    ||||| |||||||||||    
T  31409607 ttttagataaaatttgc 31409591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 111 - 332
Target Start/End: Complemental strand, 28534341 - 28534136
Alignment:
Q  111 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 210  Q
    |||||||||| |||| || |||||||||| |||||||||||||||||||||||   ||| ||||||||||||||||||||||||| | |||||| ||       
T  28534341 gtttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgtgta--- 28534245  T
Q  211 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
               || ||| ||||||||||||||| |||||||||| | | |||   ||||||||||| ||||||||||||||||||||||||||||  |||    
T  28534244 -----------ggagtt-attttcgggtgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagat 28534157  T
Q  311 ctggtttttaaataaaatttgc 332  Q
     |||||||| ||||||||||||    
T  28534156 ttggttttt-aataaaatttgc 28534136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 112 - 306
Target Start/End: Original strand, 23983474 - 23983668
Alignment:
Q  112 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatgg 211  Q
    ||||||||| |||| || ||||||||||  ||||||||||||||||||||||   ||   |||||||||||| ||| || |||| | |||||| ||  |     
T  23983474 tttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttgtcctcatgtgtgttgaaggtaaggtatgactaggtgttgtgtgtaggga 23983573  T
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 306  Q
    ||||||||||| |||||||||| || || ||| |||||||||||  | ||||  |||||||||||||||||||| ||| ||||||| ||||||||    
T  23983574 tgtcttttatgatgtttatttttggatgctccgcctatatacgatgcctttaatttgtattctctgaatcaccgatctttgttcgttttgagcag 23983668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 113 - 326
Target Start/End: Complemental strand, 9427930 - 9427715
Alignment:
Q  113 ttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatctt-gtgtttaatgg 211  Q
    |||||||| || |||| ||||||| || |||||||||||||| ||||||||   |   |||||| ||||||||||| |||||| | || | |  ||  ||    
T  9427930 ttcgtgaaagaatttgttttaggtagtgatgtttattttggtaggtgttgtcctcgtgggtgttaaaggtagggttgggctaggtttttgggcgtatggg 9427831  T
Q  212 tgtcttt-tatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
    ||| ||| ||||| ||||||||| || | |||| ||||||||||   ||||||| ||||||||||| |||||||| |||||||||||||||||||  |||    
T  9427830 tgtttttgtatggagtttatttttggatattccgcctatatacgttgcatttagtttgtattctctaaatcaccgatctctgttcgtcttgagcaaggat 9427731  T
Q  311 ctggtttttaaataaa 326  Q
    ||||||||||||||||    
T  9427730 ctggtttttaaataaa 9427715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 3478679 - 3478798
Alignment:
Q  212 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
    ||||||||| |||||||||||||||||||||| |||||||||| | | ||| || ||| | |||||   ||||||||||||||| ||||||| ||| |||    
T  3478679 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttcaggttgcactctctt--tcaccggtctctgtttgtcttgatcagggat 3478776  T
Q  311 ctggtttttaaataaaatttgc 332  Q
    |||||| |||||||||||||||    
T  3478777 ctggttgttaaataaaatttgc 3478798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 171 - 331
Target Start/End: Original strand, 9107440 - 9107600
Alignment:
Q  171 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 270  Q
    |||||||||||||| |||||||||| | |||||| |   | |||||||||||||||| ||||| | | ||||| ||| |||||| | | |||   |||||    
T  9107440 ggtgttgaaggtagagtttggctaggtgttgtgtgttgggatgtcttttatggtgttcatttttgtgcgttccgcctttatacggcgcctttgatttgta 9107539  T
Q  271 ttctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    |||| |||||||| | ||  |||||||||||||||| |||  |||||||||||||||||||    
T  9107540 ttctttgaatcactgatcattgttcgtcttgagcagggattaggtttttaaataaaatttg 9107600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 22567950 - 22567725
Alignment:
Q  103 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgt 202  Q
    ||||| |||||||||||| |||| || |||||||||| |||| ||||||||||| ||||||    || |||||||||||||||||||| |||| | ||||    
T  22567950 cagtggttgtttcgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttgtccctaggggtgttgaaggtagggtttgactaggtgttgt 22567851  T
Q  203 gtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccgg--tctctgttcgtctt 300  Q
    || ||  | ||| ||||||||||| | ||||   ||||||| |||||||||| | | ||| | ||||||  ||| ||| |||||  ||||||||||||||    
T  22567850 gtgtagggctgt-ttttatggtgtgt-tttttttgtgttccgcctatatacggcgccttttgtttgtat--tctaaatgaccggtctctctgttcgtctt 22567755  T
Q  301 gagcagcgatctggtttttaaataaaatttg 331  Q
    |  ||| |||||||||||| |||||||||||    
T  22567754 ggacagtgatctggttttt-aataaaatttg 22567725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 42533006 - 42532892
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||| | |||||||| |||||||||| | | ||| | |||||||||| |   |||||||||||||||||||||||||| ||| ||||    
T  42533006 ttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtattctcagttccaccggtctctgttcgtcttgagcagggatttggt 42532907  T
Q  316 ttttaaataaaattt 330  Q
    | |  ||||||||||    
T  42532906 tgtctaataaaattt 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 26385903 - 26385792
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    |||||||||||||||||| ||||||||| |||||||||| |   |||   ||||| | ||||||||| ||||||||||||||||||||||| ||||||      
T  26385903 ttttatggtgtttatttt-gggtgttccgcctatatacggcgtcttt---ttgtagtttctgaatcatcggtctctgttcgtcttgagcagggatctgac 26385808  T
Q  316 ttttaaataaaatttg 331  Q
    | ||||||||| ||||    
T  26385807 tattaaataaattttg 26385792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 47456770 - 47456706
Alignment:
Q  266 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    ||||||| ||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  47456770 ttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggttttt-aataaaatttg 47456706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 6726147 - 6726051
Alignment:
Q  235 gggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    ||||||||| |||||||||| |   ||| | |||||||||| |  |||||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  6726147 gggtgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 48058405 - 48058306
Alignment:
Q  230 ttttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 329  Q
    |||| ||||||||| |||||||| ||| | ||| | |||||||||||   ||||||||||||||| ||||||||||| ||| |||||||| |||||||||    
T  48058405 ttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggttttt-aataaaatt 48058307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 13312180 - 13312287
Alignment:
Q  225 gtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaata 324  Q
    ||||||||||||||||||| ||||||||| |  | ||||| ||||||| |||||||||  | |||| ||||||||| ||| | ||||  ||| |||||||    
T  13312180 gtttattttcgggtgttccgcctatatacaaagcctttagtttgtattatctgaatcattgatctcagttcgtcttaagctgagatcgagttattaaata 13312279  T
Q  325 aaatttgc 332  Q
    ||||||||    
T  13312280 aaatttgc 13312287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 16828839 - 16828752
Alignment:
Q  224 tgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 311  Q
    |||||||||||||||||||| |||||||||| | ||||| | |||||||||| |  |||||||||| |||| ||||||| ||| ||||    
T  16828839 tgtttattttcgggtgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtctttgtttgtcttgaacagagatc 16828752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 10621101 - 10621064
Alignment:
Q  19 aatctttgtttccaatcgatgagttggatttcttagat 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10621101 aatctttgtttccaatcgatgagttggatttcttagat 10621064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 40292757 - 40292642
Alignment:
Q  214 tcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctg 313  Q
    ||||||||||| |||| ||| || |||||| | |||||||| | | ||||  ||||| ||||| || ||||||||||||||||||||||| || ||||||    
T  40292757 tcttttatggtttttacttt-ggatgttccgcatatatacggcgcgtttaacttgtagtctctaaaacaccggtctctgttcgtcttgaggagggatctg 40292659  T
Q  314 gtttttaaataaaatttg 331  Q
     ||||| |||||||||||    
T  40292658 attttt-aataaaatttg 40292642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 33719349 - 33719413
Alignment:
Q  266 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaattt 330  Q
    |||||||||| |  |||||| |||||||||||||||||||| ||||||||| || ||||||||||    
T  33719349 ttgtattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 9657715 - 9657779
Alignment:
Q  274 tctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaa 338  Q
    ||||||| |||||||||||||||||||| |||| |||  ||||||  ||||||||||||| ||||    
T  9657715 tctgaatgaccggtctctgttcgtcttgtgcagggattaggttttctaataaaatttgcctttaa 9657779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 6716483 - 6716368
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||| ||||||||   |||||||| | | ||||  ||||||||||||  ||| | ||||| ||| ||||||||||| ||  ||||    
T  6716483 ttttagggtgtttattttcaggtgttccggttatatacggcccctttaatttgtattctctgtttcatctgtctcggtttgtcttgagcagggacttggt 6716384  T
Q  316 ttttaaataaaatttg 331  Q
      ||||||||||||||    
T  6716383 ggttaaataaaatttg 6716368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 2359342 - 2359470
Alignment:
Q  214 tcttttatggtgtttattttcgggtgttccacctatatacgacacatt---tagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 310  Q
    ||||||||||||| |||||||| ||||| | |||||||||| |    |   ||| ||||||| |||||||||||  ||||||||||||||||||||  ||    
T  2359342 tcttttatggtgtatattttcgtgtgtttcgcctatatacggcggcgtctgtagtttgtattttctgaatcaccactctctgttcgtcttgagcagatat 2359441  T
Q  311 ctggtttttaaataaaatttgccgttaaa 339  Q
    |   | |||| ||||||||||| ||||||    
T  2359442 caaatctttatataaaatttgctgttaaa 2359470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 48058476 - 48058443
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||| |||||||||||||||||||||||    
T  48058476 tttaggtggtgatgtttattttggtgggtgttgt 48058443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 12296518 - 12296630
Alignment:
Q  226 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataa 325  Q
    |||||||| ||||||||  ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||||||| ||||||||||    
T  12296518 tttatttttgggtgttctgcctgtatacgacacatttagtttgtattctctgaatcatcggtctctattcgttttgagcagagatctgg-ttttaaataa 12296616  T
Q  326 aatttgccgttaaa 339  Q
    ||||||| ||||||    
T  12296617 aatttgctgttaaa 12296630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 228 - 336
Target Start/End: Complemental strand, 20632233 - 20632124
Alignment:
Q  228 tattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaa 326  Q
    ||||||||||| |||| ||||||||| || | ||| || ||||||||||||||||||||||||| ||||||||| |||||  ||||| ||||||||||||    
T  20632233 tattttcgggtattccgcctatatacaacgccttttagtttgtattctctgaatcaccggtctcagttcgtcttaagcaggaatctgttttttaaataaa 20632134  T
Q  327 atttgccgtt 336  Q
    ||||||||||    
T  20632133 atttgccgtt 20632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 46487579 - 46487694
Alignment:
Q  181 gtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaat 280  Q
    |||||||||| |||| | |||||| ||  |||| | ||||| |||||||||||||| |||||| |||||||||||  | ||||| ||||||||||| |||    
T  46487579 gtagggtttgtctaggtgttgtgtgtaggggtgccatttattgtgtttattttcggatgttccgcctatatacgatgcctttagtttgtattctctaaat 46487678  T
Q  281 caccggtctctgttcg 296  Q
    ||||||||||||||||    
T  46487679 caccggtctctgttcg 46487694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 211 - 332
Target Start/End: Complemental strand, 19814970 - 19814848
Alignment:
Q  211 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    |||||||||||| |||||||||| ||||||||  | ||||||| || | ||| || ||||| ||||||  | | ||||||||||||||||||||||| ||    
T  19814970 gtgtcttttatgatgtttatttttgggtgttctgcttatatacaacgccttttagtttgtactctctgttttatcggtctctgttcgtcttgagcaggga 19814871  T
Q  310 tctggtttttaaataaaatttgc 332  Q
    ||||||| |||||||||||||||    
T  19814870 tctggttgttaaataaaatttgc 19814848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 28967209 - 28967324
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 315  Q
    ||||| ||||||||||||| |||||||| |||||||||  | | ||| | ||||||| ||||  |||||| ||||||||||||||||||||  ||||||     
T  28967209 ttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcagaaatctgg- 28967307  T
Q  316 ttttaaataaaatttgc 332  Q
    |||||||||||||||||    
T  28967308 ttttaaataaaatttgc 28967324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 41117723 - 41117600
Alignment:
Q  208 atggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagc 307  Q
    |||||||  |||| |||||||||||||||||||||| |||||||||||  | | | | ||||| ||||    ||||| |||||||||||||||||||||     
T  41117723 atggtgttatttagggtgtttattttcgggtgttccgcctatatacgatgcctcttgtttgtagtctcaatttcacctgtctctgttcgtcttgagcaga 41117624  T
Q  308 gatctggtttttaaataaaatttg 331  Q
    ||||| ||| || |||||||||||    
T  41117623 gatctagttgtttaataaaatttg 41117600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 37347363 - 37347297
Alignment:
Q  265 attgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 331  Q
    |||||| ||||| |||||||  ||||||||| |||||||||| ||||||||||||||||||| ||||    
T  37347363 attgtagtctctaaatcaccaatctctgttcatcttgagcagtgatctggtttttaaataaattttg 37347297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 39420788 - 39420741
Alignment:
Q  211 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacac 258  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  39420788 gtgttttttatggtgttcattttcgggtgttccgcctatatacgacac 39420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 38930122 - 38930238
Alignment:
Q  216 ttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg-ttcgtcttgagcagcgatctg 313  Q
    |||||||||||||||||| ||||||||||||||||||||| | | ||| | ||||| | | ||  ||||||||||||| || ||||||||||| | ||||    
T  38930122 ttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgtact-tatgtttcaccggtctctgttttgtcttgagcagagttctg 38930220  T
Q  314 gtttttaaataaaatttgc 332  Q
     ||||| ||||||||||||    
T  38930221 attttt-aataaaatttgc 38930238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 42719496 - 42719605
Alignment:
Q  222 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaa 321  Q
    ||||||||||||| ||| |||| | |||||||| |   ||| | |||||||||| |  |||||||||||| |||||||||||||| ||| || || || |    
T  42719496 ggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgttta 42719595  T
Q  322 ataaaatttg 331  Q
    ||||||||||    
T  42719596 ataaaatttg 42719605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 13528739 - 13528803
Alignment:
Q  274 tctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaa 338  Q
    ||||||| |||||||||||||||||||| |||| |||  ||||||  ||||||||||||| ||||    
T  13528739 tctgaatgaccggtctctgttcgtcttgtgcagggattaggttttctaataaaatttgcctttaa 13528803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 21983553 - 21983506
Alignment:
Q  284 cggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  21983553 cggtctctgttcgtcttgagcagggatctgattttt-aataaaatttgc 21983506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 9262800 - 9262893
Alignment:
Q  239 gttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    |||||| ||||||||| | | ||| | |||||||||| |  ||| |||||| |||||||||||||| | ||| ||||| || ||||||||||||    
T  9262800 gttccaactatatacggcgccttttgtttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgc 9262893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 12296446 - 12296479
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||| |||||||||||||||||||||||    
T  12296446 tttaggtggtgatgtttattttggtgggtgttgt 12296479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 37035 - 37156
Alignment:
Q  210 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 309  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||  |   ||| | ||||||| || |  ||||||||||||||||||||||||||| ||    
T  37035 ggtgttttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctgttcgtcttgagcaggga 37134  T
Q  310 tctggtttttaaataaaatttg 331  Q
    || |||| || |||||| ||||    
T  37135 tcaggttgtttaataaattttg 37156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 36963 - 37024
Alignment:
Q  99 tttacagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgt 160  Q
    ||||||||| | ||||||||||||||| || |||||||||| | || ||||||| |||||||    
T  36963 tttacagtggtggtttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgt 37024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 58462 - 58560
Alignment:
Q  216 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 314  Q
    ||||| ||| |||||||| |||||||| ||||||||||| | | ||| | || |||| ||||  |||||||||||| |||||||||||||| |||||||    
T  58462 ttttagggtatttatttttgggtgttctacctatatacggcgccttttgtttctattatctgtttcaccggtctcttttcgtcttgagcagggatctgg 58560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 426622 - 426559
Alignment:
Q  269 tattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 332  Q
    |||| ||||||||||  ||||||| |||||||||| || |||||| ||||||||||||||||||    
T  426622 tattatctgaatcacatgtctctgatcgtcttgagtagggatctgatttttaaataaaatttgc 426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 6829 - 6862
Alignment:
Q  130 tttaggtggtaatgtttattttggtgggtgttgt 163  Q
    |||||||||| |||||||||||||||||||||||    
T  6829 tttaggtggtgatgtttattttggtgggtgttgt 6862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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