View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347-Insertion-5 (Length: 526)
Name: NF5347-Insertion-5
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 7 - 526
Target Start/End: Original strand, 23008128 - 23008647
Alignment:
| Q |
7 |
acaacattccattccgactccaaaatcttcacccatttttcactctttaaaccatgttgctgaagaagttgacagtctaacaccaatgaatgatgaagca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23008128 |
acaacattccattccgactccaaaatcttcacccatttttcactctttaaaccatgttgctgaagaagttgacagtctaacaccaatgaatgatgaagca |
23008227 |
T |
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| Q |
107 |
ggaccagaggtaactatcaatctcactagggatgaaggccttcgacaggaagagaaaatgtgaaatcacgccattgcagatttgccccctcctcgagatt |
206 |
Q |
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| T |
23008228 |
tgaccagaggtaactatcaatctcaccagggatgaaggccttcgacaggaagagaaaatgtgaaatcacgccattgcagatttgccctctcctcgagatt |
23008327 |
T |
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| Q |
207 |
catctccagcgaggaatatctttagtaccagaaataccaatgaaaaaagtgatcaagctgaagatgatgaaatccacaccaacatagaagaaggccatgc |
306 |
Q |
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|||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
23008328 |
catctccaacgaggaatatctctagtaccggaaataccaacgaaaaaagtgatcaagctgaagatgatgaaatccacaccaacatagacggaggccatgc |
23008427 |
T |
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| Q |
307 |
gatcggtactgaggatcagccataaggagatgctgatttggtcgaacaagagcaaaacaatgacattgttatgatcgagcaagaccaatgttccccacaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23008428 |
gatcggtactgaggatcagccataaggagatgctgatttggtcgaacaagagcaaaacaatgacattgttatgatcgagcaagaccaatgttccccacaa |
23008527 |
T |
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| Q |
407 |
gacaaaagttcgaaaaaggttgagaagagaacatctccttctaacgaggaagttgaagatgatggtaattcttttaacaagtctaaaattgaaataacac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23008528 |
gacaaaagttcgaaaaaggttgagaagagaacatctccttctaacgaggaagttgaagatgatggtaattctcttaacaagtctaaaattgaaataacac |
23008627 |
T |
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| Q |
507 |
ctcctaccaaccttcaaacc |
526 |
Q |
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| T |
23008628 |
ctcctaccaaccttcaaacc |
23008647 |
T |
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