View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5347-Insertion-7 (Length: 513)

Name: NF5347-Insertion-7
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5347-Insertion-7
NF5347-Insertion-7
[»] chr1 (3 HSPs)
chr1 (8-513)||(50909434-50909919)
chr1 (10-112)||(43548535-43548637)
chr1 (32-112)||(29368771-29368850)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 50909919 - 50909434
Alignment:
Q  8 catagatagatgaagtcatcgtactacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttac 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50909919 catagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttac 50909820  T
Q  108 tcacactttagcaagaccttgcgtagcgtaggtgtacttttgtttatgtctcttttgaattgggttgggtttaatcgtggatgtgtttagcctattttca 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||    
T  50909819 tcacactttagcaagagcttgcgtagcgtaggtgtacttttgtttatgtctcttttgaattgggttgggttta----------------gcctattttca 50909736  T
Q  208 agttaaataaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgcccccaaaattgatttataaatcaatcttaattcttac 307  Q
    ||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  50909735 agttaaat----ctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgtcccccaaattgatttataaatcaatcttaattcttac 50909640  T
Q  308 acatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaaattcataatttttaacatattcaaatttcaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50909639 acatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaaattcataatttttaacatattcaaatttcaaaa 50909540  T
Q  408 tctttgtgtaaaatacattttttaagacttttacacatccggactttgaaattcgaatgcgtgaaattcagttttctcgttgaaatatgctgccatagtg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50909539 tctttgtgtaaaatacattttttaagacttttacacatccggactttgaaattcgaatgcgtgaaattcacttttctcgttgaaatatgctgccatagtg 50909440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 43548637 - 43548535
Alignment:
Q  10 tagatagatgaagtcatcgtactacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc 109  Q
    |||||||||||||||  | |  ||||||||||||||| |||||| || |||||||||||||  | |||||||||||| ||  ||||||| ||||||||||    
T  43548637 tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc 43548538  T
Q  110 aca 112  Q
    |||    
T  43548537 aca 43548535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 29368850 - 29368771
Alignment:
Q  32 tacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcaca 112  Q
    ||||| |||||||||||||| | |||||||| |||||||  ||||||||||| ||||||||| |||| |||||||||||||    
T  29368850 tacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcaca 29368771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University