View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5347-Insertion-8 (Length: 460)

Name: NF5347-Insertion-8
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5347-Insertion-8
NF5347-Insertion-8
[»] chr5 (12 HSPs)
chr5 (7-460)||(38442791-38443241)
chr5 (7-146)||(38182944-38183083)
chr5 (7-146)||(38188048-38188187)
chr5 (7-146)||(38210170-38210309)
chr5 (7-152)||(38183191-38183336)
chr5 (7-152)||(38215021-38215166)
chr5 (7-146)||(38169517-38169656)
chr5 (7-146)||(38197448-38197587)
chr5 (7-146)||(38215274-38215412)
chr5 (7-152)||(38185300-38185445)
chr5 (7-152)||(38212912-38213057)
chr5 (7-131)||(38453254-38453380)
[»] chr4 (1 HSPs)
chr4 (397-460)||(53352659-53352722)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 38443241 - 38442791
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  38443241 atgatcatgaagagcagtaagcctaggttggatttctccaccataagtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtattg 38443142  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgttgggaccttctgnnnnnnnaactatgtgaattgtgagatattcaaatttatatgtatttt 206  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||     
T  38443141 agaatgaaaagagggttcgagaaaagacggatgaaactgttgggaccttctctttttttaactatgtgaattgtgagatattcaaatttatatgtattt- 38443043  T
Q  207 cattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggcaaatatagtttgactaaccgaattttccaaatact 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  38443042 cattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggc-aatatagttggacttaccgaattttccaaatact 38442944  T
Q  307 atgggaatgtgaaaattcttatccatgttgtttgttaacttttcacgtgaannnnnnnngataagccatgtaacttatcccatgccatttatataaggca 406  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||| ||||||||||||| ||||||||||||||||    
T  38442943 atgggaatgtgaaaattcttat-catgttgtttgttaacttttcacgtgaattttttttgataagccatttaacttatcccatcccatttatataaggca 38442845  T
Q  407 tataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaac 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38442844 tataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaac 38442791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 38182944 - 38183083
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38182944 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg 38183043  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38183044 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 38183083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 38188187 - 38188048
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38188187 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg 38188088  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38188087 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 38188048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 38210170 - 38210309
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38210170 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg 38210269  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38210270 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 38210309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 38183336 - 38183191
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38183336 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg 38183237  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac 152  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||    
T  38183236 agagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac 38183191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 38215021 - 38215166
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38215021 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg 38215120  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac 152  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||    
T  38215121 agagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac 38215166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 38169656 - 38169517
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  38169656 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactg 38169557  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 146  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  38169556 agagtgtaaagagggttcgagaaaagacgggtgaaactgt 38169517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 38197448 - 38197587
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  38197448 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactg 38197547  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 146  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  38197548 agagtgtaaagagggttcgagaaaagacgggtgaaactgt 38197587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 38215412 - 38215274
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38215412 atgatcatgaagagcagtaagcctaggttggatttt-ccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg 38215314  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgt 146  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  38215313 agagtgaaaagagggttcaagaaaagacgggtgaaactgt 38215274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 38185445 - 38185300
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  38185445 atgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactg 38185346  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac 152  Q
    |||||||||| ||| ||||||||||||||  |||||| ||||||||    
T  38185345 agagtgaaaataggattcgagaaaagacgtctgaaacagttgggac 38185300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 38212912 - 38213057
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  38212912 atgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactg 38213011  T
Q  107 agagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac 152  Q
    |||||||||| ||| ||||||||||||||  |||||| ||||||||    
T  38213012 agagtgaaaataggattcgagaaaagacgtctgaaacagttgggac 38213057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 38453254 - 38453380
Alignment:
Q  7 atgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg 106  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |    
T  38453254 atgatcatgaagagaagtaagccttggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaa--gttttgagagggtaccg 38453351  T
Q  107 ----agagtgaaaagagggttcgagaaaa 131  Q
        ||| |||||||||| ||||||||||    
T  38453352 accaagattgaaaagaggattcgagaaaa 38453380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 53352659 - 53352722
Alignment:
Q  397 atataaggcatataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaac 460  Q
    ||||||||||||||||||||| ||||||||||  || |||||| |||||||||||||| |||||    
T  53352659 atataaggcatataacttatcccaattatattaccatgtatatcgcacaaacctaccttcaaac 53352722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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