View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347-Insertion-9 (Length: 227)
Name: NF5347-Insertion-9
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 49583889 - 49583670
Alignment:
| Q |
8 |
catctctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagt |
107 |
Q |
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| T |
49583889 |
catctctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagt |
49583790 |
T |
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| Q |
108 |
tcttcccaaatatatataaaccaaggactaaaccggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttc |
207 |
Q |
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| T |
49583789 |
tcttcccaaatatatataaaccaaggactaaaccggcctcttcaatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttc |
49583690 |
T |
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| Q |
208 |
atgctcctcatgcatcccaa |
227 |
Q |
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| T |
49583689 |
atgctcctcatgcatcccaa |
49583670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 49589153 - 49588989
Alignment:
| Q |
41 |
ccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatatataaaccaaggactaaac |
140 |
Q |
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|||||||||||||||| | | |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |||||||||||| |
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| T |
49589153 |
ccataatagaatgacagtttatccttcattttcttattgcgtataaaccttttcacttgaacgaagttcttcccaaatgtataaaagccaaggactaaat |
49589054 |
T |
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| Q |
141 |
cggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgt |
205 |
Q |
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| T |
49589053 |
tggcctcttcgatttcagtccaggtatcagttcaagaaccatgaacaagaatcttccctttatgt |
49588989 |
T |
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