View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5347_high_10 (Length: 391)

Name: NF5347_high_10
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5347_high_10
NF5347_high_10
[»] chr6 (5 HSPs)
chr6 (1-374)||(11947111-11947477)
chr6 (68-374)||(17716039-17716337)
chr6 (68-374)||(14667094-14667391)
chr6 (1-73)||(14666970-14667042)
chr6 (33-73)||(17715947-17715987)
[»] chr8 (6 HSPs)
chr8 (68-374)||(45349687-45349983)
chr8 (1-188)||(28245034-28245221)
chr8 (213-374)||(28245251-28245412)
chr8 (68-194)||(17630113-17630239)
chr8 (1-73)||(45349563-45349635)
chr8 (1-73)||(17629986-17630061)
[»] chr7 (1 HSPs)
chr7 (1-319)||(9238396-9238704)
[»] chr5 (6 HSPs)
chr5 (68-374)||(24046492-24046791)
chr5 (213-374)||(23758815-23758976)
chr5 (213-374)||(23824275-23824436)
chr5 (213-374)||(23758226-23758387)
chr5 (213-374)||(23823682-23823844)
chr5 (1-73)||(24046843-24046915)
[»] chr3 (5 HSPs)
chr3 (3-188)||(13851786-13851971)
chr3 (213-374)||(1658102-1658263)
chr3 (68-194)||(1658290-1658412)
chr3 (1-72)||(1658465-1658536)
chr3 (213-249)||(13851722-13851758)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 11947111 - 11947477
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11947111 tctcattccgttgagcttctcacggaactgaatctcaccgtcaagcttcacacttcaccaatcgagcttcacaaatcctttttcctctttcgctcacgca 11947210  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnn 200  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | |||| ||  ||||||||||||||  ||||          
T  11947211 ggtaacactctcgaattcttcttcggtttggcatttttcgcgcattcggttttgatttcgct-agatttcatcgcaattatcttagattcgtgctttttt 11947309  T
Q  201 nnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaa 300  Q
                ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11947310 tttttc------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaa 11947403  T
Q  301 attcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  11947404 attcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgttagatgttgccaaagaat 11947477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 68 - 374
Target Start/End: Original strand, 17716039 - 17716337
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | || || ||||||||||||||||| ||    
T  17716039 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcgatttcacattttttgcgctttcggttttgatttcgcttagat 17716138  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||| ||||                  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  17716139 ttcatcgcaattatcttagatccgtgcttttattttt--------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattcta 17716230  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17716231 tgtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgcc 17716330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 68 - 374
Target Start/End: Original strand, 14667094 - 14667391
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||| ||    
T  14667094 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgctttcggtattgattttgcttagat 14667193  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||| ||||                  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  14667194 ttcatcgcaattatcttagatccgtgcttttttttt---------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattcta 14667284  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
     |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  14667285 cgtgtttaattttcgtttcacaatttaactcaaattcttcttattctgtttggcatttgtgatttataatttctttgaaattcatgtctttgatgttgcc 14667384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14666970 - 14667042
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14666970 tctcattctgtcgagcttctcaccgaactgaatctcaccgtcgagcttcacacgtcatcgatcgagcttcaca 14667042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 17715947 - 17715987
Alignment:
Q  33 tctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17715947 tctcaccgtcgagcttcacacttcaccgatcgagcttcaca 17715987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 68 - 374
Target Start/End: Original strand, 45349687 - 45349983
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||    
T  45349687 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagat 45349786  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||| ||||                  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45349787 ttcatcgcaattatcttagatccgtgctttttttt----------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattcta 45349876  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45349877 tgtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttcttttaaattcatgtgtttgatgttgcc 45349976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 28245034 - 28245221
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28245034 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcactgatcgagcttcacaaatcctttttcctctttcgctcacgca 28245133  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat 188  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||  ||||||||||||||    
T  28245134 ggtaaaactctcgaattcttcttcggtttcccatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagat 28245221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 28245251 - 28245412
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28245251 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 28245350  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28245351 ctgtttggcatttgtgatttataatttctttgaaattcatatgtttgatgttgccaaagaat 28245412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 17630113 - 17630239
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||| ||    
T  17630113 ttcacaaatcctttttcccctttcgctcacacaggtaacactctcgaattcttcttctttttcgcatttttcgtgctttcggttttgatttcgcttagat 17630212  T
Q  168 tttataacaattatcttagatcagtgc 194  Q
    || |   |||||||||| |||| ||||    
T  17630213 ttcaccgcaattatctttgatccgtgc 17630239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45349563 - 45349635
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45349563 tctcatgccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccaatcgagcttcaca 45349635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17629986 - 17630061
Alignment:
Q  1 tctcattccgtcgagcttctcacgg---aactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||||||| |||||||||| |   |||||||||||| |||| |||||||||||||||||||| |||||||||    
T  17629986 tctcattccgtccagcttctcaccgtctaactgaatctcaacgtcaagcttcacacttcaccgatcaagcttcaca 17630061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 9238396 - 9238704
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9238396 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcacggatagagcttcacaaatcctttttcctctttcgctcacgca 9238495  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnn 200  Q
    ||||| |  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||  ||||||||||||||  ||||          
T  9238496 ggtaaaa--ctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagattcgtgc------ 9238587  T
Q  201 nnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaa 300  Q
                |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9238588 -ttttttttttcctgttatgaatcatct-tttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaa 9238685  T
Q  301 attcttcttgttctgtttg 319  Q
    |||||||||||||||||||    
T  9238686 attcttcttgttctgtttg 9238704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 68 - 374
Target Start/End: Complemental strand, 24046791 - 24046492
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  || || | |||| |||||||||| ||    
T  24046791 ttcataaatcctttttcctctttcgctcacgcaggtaacactctcgaattctttttcggtttcgcatttttcacgccttcgttttttatttcgcttagat 24046692  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||  ||||                  | ||||||||||||||||||| |||||||||||||| ||||||||||||||  ||    
T  24046691 ttcatcgcaattatcttagattcgtgcttttttttttt-------cagttatgaatcatctatttcgttcacattgtttgatttttgttttgaaatgtta 24046599  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24046598 tgtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgcc 24046499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 23758815 - 23758976
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23758815 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 23758914  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  23758915 ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaat 23758976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 23824275 - 23824436
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23824275 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 23824374  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  23824375 ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaat 23824436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 23758226 - 23758387
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23758226 ctgttatgaatcatctatttcgttcacattgtttaattttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgtt 23758325  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  23758326 ctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaat 23758387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 23823682 - 23823844
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgtttt-gaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgt 311  Q
    ||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  23823682 ctgttatgaatcatctatttcgttcacattgtttaatttttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgt 23823781  T
Q  312 tctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  23823782 tctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaat 23823844  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24046915 - 24046843
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24046915 tctcattccgtcgagcttctcaccgaactgaatctcaccatcgagcttcacacttcaccgatcgagcttcaca 24046843  T

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Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 13851971 - 13851786
Alignment:
Q  3 tcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgcagg 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851971 tcattccgtcgagcttctcacggaactgaatctcaccgccgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgcagg 13851872  T
Q  103 taacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat 188  Q
    |||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||| |||| || |||||||||||||||    
T  13851871 taacactctcgaattcttcttcggtttcacatttttcgcgcattcagttttgatttcgcttagatttcatcacaattatcttagat 13851786  T

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Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 1658263 - 1658102
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1658263 ctgttatgagtcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 1658164  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaat 374  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1658163 ctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgccaaagaat 1658102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 1658412 - 1658290
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||    
T  1658412 ttcacaaatcctttttcctctttcgctcaagcaggtaaca--ctcgaattcttcttcggtttcgcatttttcgcgcattt--ttttgatttcgcttagat 1658317  T
Q  168 tttataacaattatcttagatcagtgc 194  Q
    || ||  ||||||||||||||| ||||    
T  1658316 ttcatcgcaattatcttagatccgtgc 1658290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1658536 - 1658465
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcac 72  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1658536 tctcattctgtcgagcttctcacggaactgaatctcaccgtcgagcttcatacttcaccgatcgagcttcac 1658465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 13851758 - 13851722
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaa 249  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  13851758 ctgttatgaatcatctatttcgttcacattgtctgaa 13851722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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