View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_2 (Length: 788)
Name: NF5347_high_2
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 15 - 726
Target Start/End: Original strand, 32101294 - 32101992
Alignment:
| Q |
15 |
cagagaccagccaagcttgtgatattggtgaatttaatccatgagtgttaatactcccggtcctcattttcgtgtcattcatcttttttggtcaatattt |
114 |
Q |
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| T |
32101294 |
cagagaccagtcaagcttgtgatattggtgaatttaatccacgagtgttgatactcctagtcctcattttcgtgtcattcatcttttttggtcaatattt |
32101393 |
T |
|
| Q |
115 |
tgtttttgtagctcctgtaatacttcttatagtattaatcttcttctatgttgtaattaattaggttaatatgtgttctagtgctggcttttgtttttat |
214 |
Q |
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| T |
32101394 |
tgtttttgtagctcctgtaatacttcttatagtattaatcttcttctgtgttgtaattaagtaggtaaatatgtgttctagtgcttgcttttgtttttaa |
32101493 |
T |
|
| Q |
215 |
gaaaattaaattagactaacattcaagaatatttattaaatcaagcacaatagttattatagttgtaatcaaaacttttttgattgtgtctataaactgt |
314 |
Q |
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| T |
32101494 |
gaaaattaaatttgcctaacattcaagaatatttattaaatcaagcacattaattattatagtcataatc-aaagtttgttgattgtgtctataaattgt |
32101592 |
T |
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| Q |
315 |
ttaatgttgacattaagaattgcttccatagccgtagtagtttctcttttctttcggcttatattgcaattatatagtcccatgatttggtggcttacat |
414 |
Q |
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| T |
32101593 |
ttaatgttgacattaaaaattgcttccatagctgtagtagtttctcttttctttcagcttatattgcaattatatagtcccatgatttggtggcttacat |
32101692 |
T |
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| Q |
415 |
tgaataataaacaaatagtgtaacgaaagattggtatatttactttaaaatttagactaaatacatcaaaacttaagatataagagtattcacgtacgtg |
514 |
Q |
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| T |
32101693 |
tgaataataaacaaatagtgtaaagaaagattggtatatttac-------ttcagactaaatacatcaaaacttaagatataagagtattgacgtgcgtg |
32101785 |
T |
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| Q |
515 |
tatctaaagactctcttgattatggaggctttacttttttaacaatggaataaaaatatacattaatagaggcnnnnnnnnnnnnnnaacaaatccaaaa |
614 |
Q |
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| T |
32101786 |
tatgtaaagactcttttgattatggaggctttacttttttaacaatggaataaaaagatacattaatagaggc------tatatataaacaaaaccaaaa |
32101879 |
T |
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| Q |
615 |
ctagctacatctatataggagattattttcattataagaagccaaaatgcaatctgaacgtgaaaaacgttg-ttaaacaagacatatatgagaccaacc |
713 |
Q |
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| T |
32101880 |
ctagctacacctacataggagattattttcattataagaagccaaaatgcaatctgaacatgaaaaacgttgtttagacaagacatatatgagaccaacc |
32101979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 32102881 - 32103271
Alignment:
| Q |
15 |
cagagaccagccaagcttgtgatattggtgaatttaatccatgagtgttaatactcccggtcctcattttcgtgtcattcatcttttttggtcaatattt |
114 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
32102881 |
cagagaccaaccaaacttgtgatattggtgaatttaatccacgagtgttaatactcctagtcctcattttcgtgtccttcatattttttgatcaatattt |
32102980 |
T |
|
| Q |
115 |
tgtttttgtagctcctgtaatacttcttatagtattaatcttcttctatgttgtaattaattaggttaatatgtgttctagtgctggcttttgtttttat |
214 |
Q |
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| T |
32102981 |
tgtttttgtagatcctgtaatacttcttataatattaatcttcttatgtgttgtaattaagtaggttaatatgtgttctagtgcttgcttttgtttttaa |
32103080 |
T |
|
| Q |
215 |
gaaaattaaattagactaacattcaagaatatttattaaatcaagcacaatagttattatagttgtaatcaaaacttttttgattgtgtctataaactgt |
314 |
Q |
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| T |
32103081 |
gaaaattaaattagactaacattcaagaatatttatcaaatcaagcacaataattattatagtcataatcaaaa-aatttcgattgtgtctataaactgt |
32103179 |
T |
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| Q |
315 |
ttaatgttgacattaagaattgcttccatagccgtagtagtttctcttttctttcggcttatattgcaattatatagtcccatgatttggtg |
406 |
Q |
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| T |
32103180 |
ttaatgttgacattgagaattgtttccatagccgttgtagtttctcgtttctttcagcttatattgtaattatatagtcccatgatttggtg |
32103271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 539 - 726
Target Start/End: Original strand, 32103366 - 32103558
Alignment:
| Q |
539 |
gaggctttacttttttaacaatggaataaaaa-tatacattaatagaggcnnnnnnnnnnnnnnaacaaatccaaaactagctacatctatataggagat |
637 |
Q |
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| T |
32103366 |
gaggctttactttttcaacaatggaataaaaaatatacattaacagaggctata----------aacaaatccaaaactagctacaccaacataggagat |
32103455 |
T |
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| Q |
638 |
tattttcattataagaagccaaaatgcaatctgaacgtgaaaaacgttg--------------ttaaacaagacatatatgagaccaacccaagcataac |
723 |
Q |
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| T |
32103456 |
ttttttcattataagaagccaaaattcaatatgaacatgaaaaacgttgtggagccattcatattagacaagacatatatgagaccaacccaagcataac |
32103555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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