View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_22 (Length: 251)
Name: NF5347_high_22
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 39435802 - 39435640
Alignment:
| Q |
84 |
ggttgctcgttgaatgaacaagttaacgatataggcgtaagtgaaaatgaaaatagagaagtaggaatggttagtgaacaagataacaatatagacacaa |
183 |
Q |
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| T |
39435802 |
ggttgctcgttgaatgaacaagttaacaatataggcgtaagtgaaaatgaaaatagagaagtaggaatggttagtgaacaagataacaatatagacacaa |
39435703 |
T |
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| Q |
184 |
atgaaagtgaaaatagagacttgattcttttccaaatgc-----tttattgcttatagaataat |
242 |
Q |
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| T |
39435702 |
atgaaagtgaaaatagagactt-attcttttccaaatgcttttttttattgcttatagaataat |
39435640 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 22094922 - 22094881
Alignment:
| Q |
159 |
gaacaagataacaatatagacacaaatgaaagtgaaaataga |
200 |
Q |
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| T |
22094922 |
gaacaagataacaatatagaaacaaatgaaattgaaaataga |
22094881 |
T |
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