View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_27 (Length: 242)
Name: NF5347_high_27
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 50910130 - 50910355
Alignment:
| Q |
1 |
acaagatattcgctgtctgtgctgatgatcccgagtatatgaattacaatgatatcaaggagctccttc-acaccgtttagttgaaatccgtcgattttt |
99 |
Q |
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| T |
50910130 |
acaagatattcgctgtctgtgctgatgatcccgagtatatgaattacaatgatatcaaggagctccttccacaccgtttagttgaaatccgtcgtttttt |
50910229 |
T |
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| Q |
100 |
caagattatatccttccgaaaatttcaaaatgccgttgtttggttgatactttggtttttccgtatcactactaattaactcattgaaatatatggattt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50910230 |
caagattatatccttccgaaaatttcaaaatgccgttgtttggtcgatactttggtttttccgtatcactac----taactcattgaaatatatggattt |
50910325 |
T |
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| Q |
200 |
ttcttttagtgcagtatatatacgatacct |
229 |
Q |
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| T |
50910326 |
ttcttttagtgcagtatatatacgatacct |
50910355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43548872 - 43549091
Alignment:
| Q |
1 |
acaagatattcgctgtctgtgctgatgatcccgagtatatgaattacaatgatatcaaggagct-ccttcacaccgtttagttgaaatccgtcg-atttt |
98 |
Q |
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| T |
43548872 |
acaagataattgctgtctgtgctgatgatcctgagtataggcattacaatgatatcaaggagctccctccacaccgattagctgaaatccgtcgtttttt |
43548971 |
T |
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| Q |
99 |
tcaagattatatccttccgaaaatttcaaaatgccgttgtttggttgatactttggtttttccgtatcactactaattaact-cattgaaatatatggat |
197 |
Q |
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| T |
43548972 |
tgaagattgtatccttcc-aaaagttacagatgc---tgtttgatcgatgcttttgtttttcagtatcactaattgctaactccaccgaaatacatggat |
43549067 |
T |
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| Q |
198 |
ttttcttttagtgcagtatatata |
221 |
Q |
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| T |
43549068 |
ttttcttttagtgcagtatatata |
43549091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 29369107 - 29369195
Alignment:
| Q |
12 |
gctgtctgtgctgatgatcccgagtatatgaattacaatgatatcaaggagct-ccttcacaccgtttagttgaaatccgtcgattttt |
99 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||||||||||||| ||| |||| ||||||| |||||||||||| ||||| |
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| T |
29369107 |
gctgtctgtgctgatgatcctgagtataggcattacaatgatatcaaggagctccctccacatcgtttagctgaaatccgtcgtttttt |
29369195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50901282 - 50901347
Alignment:
| Q |
1 |
acaagatattcgctgtctgtgctgatgatcccgagtatatgaattacaatgatatcaaggagctcc |
66 |
Q |
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|||||||| | |||||||||||| ||||||||||||||| | |||||| | ||||||||||||||| |
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| T |
50901282 |
acaagataattgctgtctgtgctaatgatcccgagtataggcattacactaatatcaaggagctcc |
50901347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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