View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_28 (Length: 229)
Name: NF5347_high_28
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 33649737 - 33649948
Alignment:
| Q |
12 |
attgttatattataaatagatgataaaatgttcaaagcaataagaacaggtaagtttccgtactcatatggaaggaaaatcagcctcaacaatgcaatct |
111 |
Q |
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| T |
33649737 |
attgttatattataaatagataataaaatgttcaaagcaataagaacaggtaagtttccgtactcatatggaaggaaaatcagcctctacaatgcaatct |
33649836 |
T |
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| Q |
112 |
ttgttgtgaactgttatgtgttcaaagttggaggctttttcgatatggaaaaagccttgaagctaaaagatgtcaaactgagttatcacttgaacatgct |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33649837 |
ttgttgtgaactgtcatgtgttcaaagttggaggctttttcgatatggaaaaagccttgaagctaaaagatgtcaaactgagttatcacttgagcatgct |
33649936 |
T |
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| Q |
212 |
tctgatgatgtc |
223 |
Q |
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||||| |||||| |
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| T |
33649937 |
tctgaggatgtc |
33649948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 25777785 - 25777902
Alignment:
| Q |
46 |
aagcaataagaacaggtaagtttccgtactcatatggaaggaaaatcagcctcaacaatgcaatctttgttgtgaactgttatgtgttcaaagttggagg |
145 |
Q |
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|||| |||||||||||||| ||||| |||||| |||| ||| |||||||| | |||||| |||| |||||||||| || || ||||||||||||||| || |
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| T |
25777785 |
aagctataagaacaggtaaatttccatactcacatggtagggaaatcagcattaacaattcaatatttgttgtgacctcttctgtgttcaaagttggcgg |
25777884 |
T |
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| Q |
146 |
ctttttcgatatggaaaa |
163 |
Q |
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| T |
25777885 |
cgtttttgatatggaaaa |
25777902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 25777933 - 25777980
Alignment:
| Q |
166 |
ccttgaagctaaaagatgtcaaactgagttatcacttgaacatgcttc |
213 |
Q |
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||||||||||||||||| ||||| ||| |||||||||| ||||||||| |
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| T |
25777933 |
ccttgaagctaaaagatatcaaattgaattatcacttggacatgcttc |
25777980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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