View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_30 (Length: 220)
Name: NF5347_high_30
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_30 |
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| [»] scaffold1246 (1 HSPs) |
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Alignment Details
Target: scaffold1246 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold1246
Description:
Target: scaffold1246; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 650 - 458
Alignment:
| Q |
10 |
gtcgaagaatataataaagagacgatacaaaaaggagaggaggacgatggcattaagagggacgtaacggaatgcacaatagaaaaagaaaaagaagaat |
109 |
Q |
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| T |
650 |
gtcgatgaaaataataaagagactatacaaaaaggagtggaggacgatggcattaagagggatgtaacttaatgcttaatagaaaatgaaaaagaagaat |
551 |
T |
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| Q |
110 |
ctaagttgaagattgaggatagtaaggtaaactctacaagagaaatagagaaagatgttggtaaagatatctcacataacattgtagatacaa |
202 |
Q |
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| T |
550 |
ctaagttgaagattgaggatagtaaggtaaactctacaagagaaatagagaaagatgttggtaaagatatctcacataacattgtagatacaa |
458 |
T |
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