View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5347_high_4 (Length: 443)

Name: NF5347_high_4
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5347_high_4
NF5347_high_4
[»] chr7 (3 HSPs)
chr7 (17-283)||(20072921-20073189)
chr7 (291-412)||(9237854-9237975)
chr7 (172-249)||(20083675-20083753)
[»] chr3 (3 HSPs)
chr3 (289-412)||(13852357-13852480)
chr3 (292-401)||(1658851-1658960)
chr3 (302-412)||(4848255-4848365)
[»] chr6 (5 HSPs)
chr6 (292-412)||(11946575-11946695)
chr6 (292-412)||(14666536-14666658)
chr6 (292-412)||(14323140-14323252)
chr6 (292-412)||(14416150-14416262)
chr6 (292-412)||(17715509-17715621)
[»] chr8 (2 HSPs)
chr8 (291-412)||(28244495-28244616)
chr8 (327-389)||(17629681-17629743)
[»] scaffold0838 (1 HSPs)
scaffold0838 (292-412)||(183-303)
[»] scaffold0832 (1 HSPs)
scaffold0832 (292-412)||(214-334)
[»] chr5 (2 HSPs)
chr5 (292-341)||(31406126-31406175)
chr5 (365-412)||(24047204-24047251)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 20073189 - 20072921
Alignment:
Q  17 agtttttgagatatctgaggtccgtaagtggaagacatcgaacctgtgttgtgaagaagactatgnnnnnnn----gtaaagaagcctttggacatcgaa 112  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||           || |||||||||||||||||| ||    
T  20073189 agtttttgagatatctcaggtccgtaagtggaagacatcgaagctgtattgtgaagaagactatgtttttttttttgtgaagaagcctttggacatcaaa 20073090  T
Q  113 gccgtatttattgtaaacctatgnnnnnnnnnatgaaaataaattataatcttaatgacaaaaacaataaacatgatacacacattggtggtaactttcg 212  Q
    |||||||||| ||||||||||||         | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20073089 gccgtatttagtgtaaacctatgttttttt--aggaaaagaaattataatcttaatgacaaaaacaataaacatgatacacacattggtggtaactttcg 20072992  T
Q  213 tattcattctaaagtttgcaatttgcagagttcataaatgagtttctaaaattattatgctgtaaagtttg 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20072991 tattcattctaaagtttgcaatttgcagagttcataaatgagtttctaaaattattatgctgtaaagtttg 20072921  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 9237854 - 9237975
Alignment:
Q  291 tcactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttac 390  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9237854 tcactactacaataataacttttagtaagaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttac 9237953  T
Q  391 atacaatacaacaagtaccatc 412  Q
    || |||||||||||||||||||    
T  9237954 atccaatacaacaagtaccatc 9237975  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 20083753 - 20083675
Alignment:
Q  172 aaaaacaataaacatgatacacacattggtggtaactttcgtattcattctaaag-tttgcaatttgcagagttcataa 249  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||| || |||||||||||    
T  20083753 aaaaacaataaacatgatacacacattcgtggcaacttttgtattcattctaaagttttgcaatctgtagagttcataa 20083675  T

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Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 289 - 412
Target Start/End: Complemental strand, 13852480 - 13852357
Alignment:
Q  289 tgtcactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgtt 388  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13852480 tgtcactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgtt 13852381  T
Q  389 acatacaatacaacaagtaccatc 412  Q
    |||| |||||||||||||||||||    
T  13852380 acatccaatacaacaagtaccatc 13852357  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 1658960 - 1658851
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  1658960 cactactacaataatgacttttagtaacatggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttaca 1658861  T
Q  392 tacaatacaa 401  Q
    | || |||||    
T  1658860 tccactacaa 1658851  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 302 - 412
Target Start/End: Original strand, 4848255 - 4848365
Alignment:
Q  302 ataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttacatacaatacaa 401  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||    
T  4848255 ataataacatttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttagatccaatacaa 4848354  T
Q  402 caagtaccatc 412  Q
    |||||||||||    
T  4848355 caagtaccatc 4848365  T

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Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 11946575 - 11946695
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  11946575 cactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttaca 11946674  T
Q  392 tacaatacaacaagtaccatc 412  Q
    | |||||||||||||||||||    
T  11946675 tccaatacaacaagtaccatc 11946695  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 14666536 - 14666658
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattg--atatagtaacaattgagtaaaagtgtta 389  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  14666536 cactactacaataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagctgatataatgatatatagtaacaattgagtaaaagtgtta 14666635  T
Q  390 catacaatacaacaagtaccatc 412  Q
     || |||||||||||||||||||    
T  14666636 gatccaatacaacaagtaccatc 14666658  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 14323252 - 14323140
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  14323252 cactactacaataatgacttttagcaacaacgtgattgcaacacttgaaaaattgttag--------ctgatatagtaacaattgagtaaaagtgttaca 14323161  T
Q  392 tacaatacaacaagtaccatc 412  Q
    | |||||||||||||||||||    
T  14323160 tccaatacaacaagtaccatc 14323140  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 14416262 - 14416150
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  14416262 cactactacaataatgacttttagcaacaacgtgattgcaacacttgaaaaattgttag--------ctgatatagtaacaattgagtaaaagtgttaca 14416171  T
Q  392 tacaatacaacaagtaccatc 412  Q
    | |||||||||||||||||||    
T  14416170 tccaatacaacaagtaccatc 14416150  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 17715509 - 17715621
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||| |    
T  17715509 cactactacaataatgacatttagtaataaggtgattgcaacacttgaaaaattgtta--------actgatatagtaacaattgagtaaaagtgttaga 17715600  T
Q  392 tacaatacaacaagtaccatc 412  Q
    | |||||||||||||| ||||    
T  17715601 tccaatacaacaagtatcatc 17715621  T

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Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 28244495 - 28244616
Alignment:
Q  291 tcactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttac 390  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  28244495 tcactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtaatatagtaacaattgagtaaaagtgttac 28244594  T
Q  391 atacaatacaacaagtaccatc 412  Q
    || |||||||||||||||||||    
T  28244595 atccaatacaacaagtaccatc 28244616  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 17629681 - 17629743
Alignment:
Q  327 ttgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgtta 389  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||||||    
T  17629681 ttgtaacacttgagaaattgttagctgatacagtgatatagtaagaattgagtaaaagtgtta 17629743  T

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Target: scaffold0838 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 303 - 183
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    ||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  303 cactattacaataataacttttagtaacaaggtgattgcaacatttgaaaaattgttagctgatataatgatatagtaacaattgagtaaaagtgttaca 204  T
Q  392 tacaatacaacaagtaccatc 412  Q
    | |||||||||||||||||||    
T  203 tccaatacaacaagtaccatc 183  T

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Target: scaffold0832 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 334 - 214
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 391  Q
    ||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  334 cactattacaataataacttttagtaacaaggtgattgcaacatttgaaaaattgttagctgatataatgatatagtaacaattgagtaaaagtgttaca 235  T
Q  392 tacaatacaacaagtaccatc 412  Q
    | |||||||||||||||||||    
T  234 tccaatacaacaagtaccatc 214  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 31406126 - 31406175
Alignment:
Q  292 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaa 341  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  31406126 cactactacaataatgacatttagtaacaaggtgattgcaacacttgaaa 31406175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 24047251 - 24047204
Alignment:
Q  365 tagtaacaattgagtaaaagtgttacatacaatacaacaagtaccatc 412  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||||    
T  24047251 tagtaacaattgagtaaaagtgttagatccgatacagcaagtaccatc 24047204  T

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