View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_6 (Length: 431)
Name: NF5347_high_6
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 152 - 411
Target Start/End: Complemental strand, 12508194 - 12507937
Alignment:
| Q |
152 |
aatctatttactgaaattaagtaccctgcttaaattgcttatcatatgtttttgtaaaaagaagaaaatgaatatgatgaatttttcgccgttaaattga |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12508194 |
aatctatttactgaaattaagtaccctgcttaaattgcttatcatatgtttttgtaaaaagaagaaaatgaatatgatgaatttt-cgccgttaaattga |
12508096 |
T |
|
| Q |
252 |
aagtgaattttcaatttaactgaagaaaatgaatttttgccgttcaaatgtcatttctctactcgtaaatattcacggatacatcaaaatatattgatta |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
12508095 |
aagtgaattttcaatttaactgaagaaaatgaattttcgctgttcaaatgtcatttctctactcgtaaatactcgcggatacatcaaaatatattgatta |
12507996 |
T |
|
| Q |
352 |
tctgtttagaggatgctcgcacaatatgatatagacacatataccatatatattcgacag |
411 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12507995 |
tctgtttaga-gatactcgcacaatatgatatagacacatataccatatatattcgacag |
12507937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 12508338 - 12508223
Alignment:
| Q |
8 |
cgaataaaataaacaaatatttcaattacatgttacttaatcaattttgacacagatttaaaggtacatgtgcctgcggatatccatagatgttaataaa |
107 |
Q |
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| T |
12508338 |
cgaataaaataaataaatatttcaattacatgttacttaatcaattttgacgcagatttaagggtacatgtgcctgtggatatccatagatgttaataaa |
12508239 |
T |
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| Q |
108 |
ttaaatgaattttgtt |
123 |
Q |
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|||||||||||||||| |
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| T |
12508238 |
ttaaatgaattttgtt |
12508223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 12376997 - 12376956
Alignment:
| Q |
196 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
237 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||| |
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| T |
12376997 |
tatgttttggtaaaaagaagaaaatgaatatgatgaactttt |
12376956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 32537102 - 32537143
Alignment:
| Q |
196 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
237 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32537102 |
tatgttttggtaaaaagaagaaaatgaatatgatgaattttt |
32537143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 2513866 - 2513830
Alignment:
| Q |
200 |
tttttgtaaaaagaagaaaatgaatatgatgaatttt |
236 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
2513866 |
tttttgtaaaaagaagaaaatgaatgtgatgaatttt |
2513830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 27865751 - 27865791
Alignment:
| Q |
197 |
atgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
237 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
27865751 |
atgttttggtaaaaagaataaaatgaatatgatgaattttt |
27865791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 24253407 - 24253443
Alignment:
| Q |
200 |
tttttgtaaaaagaagaaaatgaatatgatgaatttt |
236 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
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| T |
24253407 |
ttttagtaaaaagaagaaaatgaatatgatgaatttt |
24253443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 24913192 - 24913151
Alignment:
| Q |
196 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
237 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||| |
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|
| T |
24913192 |
tatgattttgtaaaaagaagaaaatgaatgtgatgaactttt |
24913151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 25366281 - 25366322
Alignment:
| Q |
196 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
237 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
25366281 |
tatgttttggtaaaaagaagaaaatgaatgtgatgaactttt |
25366322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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