View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_high_7 (Length: 421)
Name: NF5347_high_7
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 36 - 403
Target Start/End: Original strand, 38129404 - 38129764
Alignment:
| Q |
36 |
gggttccaagataggatatgtaatatatataatgtaattgtcaattatagtgaaatcatacacttgactctaatcgacgatgtcgaaactagcacaaaca |
135 |
Q |
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| T |
38129404 |
gggttctaagataggatatgtaatatatataatgtaattgtcaattatagtgaaatcatacacttgacactaatcgacgatgtcgaaactagcacaaaca |
38129503 |
T |
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| Q |
136 |
taaaaagaaattggaaaaaatagcagggttccaatgtataatgtataattggcaattattgtgaaatcatacgctatacactaatcgacgatgtcgaagt |
235 |
Q |
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| T |
38129504 |
taaaaagaaattggaaaaaatagcagggttccaatg-------tataattggcaattattgtgaaatcatacgctatacactaatcgacgatgtcgaagt |
38129596 |
T |
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| Q |
236 |
tgtctccgacgctcgactgcacatcaggttccactgcgggaggagctggaggaatgggatgaatgatgttaatgacatcccatggcagtgtcaagctatg |
335 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129597 |
tgtctccgaagctcgactgcacatcaggttccactgcgggaggagctggaggaatgggatgaatgatgttaatgacatcccatggcagtgtcaagctatg |
38129696 |
T |
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| Q |
336 |
tgtgtaagcatttgctatttcacgatcaatccttgattgcatctcccaaagtggatgttggttaaaaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129697 |
tgtgtaagcatttgctatttcacgatcaatccttgattgcatctcccaaagtggatgttggttaaaaa |
38129764 |
T |
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