View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_1 (Length: 808)
Name: NF5347_low_1
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 475 - 792
Target Start/End: Complemental strand, 1158147 - 1157830
Alignment:
| Q |
475 |
gtcaagattaaacaaattttttaacaattcgtttgtcaatgacatttcaatttgtgctagcctagtgtgcacaaactaaatttagcaaaggatctttaag |
574 |
Q |
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| T |
1158147 |
gtcaagattgaacaagtttcttaacaattcttttgtcaatgacatttcaatttgtgctagcctagtgtgcacaaactaaatttagcaaaggatctttaag |
1158048 |
T |
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| Q |
575 |
aggcatattcttattcatgaatctcttccatttttacaatttgattgatgaattagctaccacgagaattgggtgctaaatgttaggtataacttgaggg |
674 |
Q |
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| T |
1158047 |
aggcatattcttattcatgaatctcttccatttttacaatttgattgatgaattagctaccacgagaattgggtgctaaatgttaggtataacttgaggg |
1157948 |
T |
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| Q |
675 |
gctgtgttcaactaaagtaaaaccttttaaaataggaaatgtaacaaaatctacaatctaatgtaaattaaaatggatgattttgtgggttgtctcttcc |
774 |
Q |
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| T |
1157947 |
gctgtgttcaactaaagtaaaaccttttaaaatcggaaatgtaacaaaatctacaatctaatgtaaattaaaatggatgattttgtgggttgtctcttcc |
1157848 |
T |
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| Q |
775 |
ttttggggcactaggaac |
792 |
Q |
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| T |
1157847 |
ttttggggcactaggaac |
1157830 |
T |
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