View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_11 (Length: 389)
Name: NF5347_low_11
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 13213156 - 13212782
Alignment:
| Q |
1 |
aacaaatcatggatcaagtagcacaaggtcgtcctcttccacctccatttctcactagagaccttcatcttcatcctcaccatcaatttcacaccaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13213156 |
aacaaatcatggatcaagtagcacaaggtcgtcctcttccacctccatttctcactagagaccttcatcttcatcctcaccatcaatttcacaccaacca |
13213057 |
T |
|
| Q |
101 |
ccaaaccaatgaagaggaacaacaaagtggcaatgggagcttaagccgaggccaaaaaagagaacgaaacaacgaagacggcaacaacactcccaccgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13213056 |
ccaaaccaatgaagaggaacaacaaagtggcaatgggagcttaagccgaggccaaaaaagagaacgaaacaacgaagacggcaacaacactcccaccgga |
13212957 |
T |
|
| Q |
201 |
ggagaaggaaaagacgacggcggtagcggaagtgctggtggaggaagtggtggtgagatgggaagaagaccaagaggaagaccagcaggttcgaaaaaca |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13212956 |
ggagaaggaaaagacgacggtggtagcggaagtgctggtggaggaagtggtggtgagatgggaagaagaccaagaggaagaccagcaggttcgaaaaaca |
13212857 |
T |
|
| Q |
301 |
aaccaaaaccacctatcatcatcacgagggacagcgcgaacgcactccgatcccacgtgatggaagttgcaaatg |
375 |
Q |
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| T |
13212856 |
aaccaaaaccacctatcatcatcacgagggacagcgcgaacgcactccgatcccacgtgatggaagttgcaaatg |
13212782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 3332436 - 3332356
Alignment:
| Q |
263 |
aagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcatcacgagggacagcgcgaacgc |
343 |
Q |
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| T |
3332436 |
aagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgc |
3332356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
265 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacc |
313 |
Q |
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|||||||||||||||||||| | ||||| |||||||||||||||||||| |
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| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 32803278 - 32803226
Alignment:
| Q |
265 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatc |
317 |
Q |
| |
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|||||||||||||||||||| | || || ||||||| |||||||||||||||| |
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| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatc |
32803226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 46200932 - 46200969
Alignment:
| Q |
294 |
aaaaacaaaccaaaaccacctatcatcatcacgaggga |
331 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||| |
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| T |
46200932 |
aaaaacaaaccaaaaccacctattatcatcacaaggga |
46200969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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