View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_12 (Length: 370)
Name: NF5347_low_12
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6240371 - 6240573
Alignment:
| Q |
1 |
attatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
6240371 |
attatgggttgaaagaaatgaagatagaagtatgcaagcctattgcatttctcattgataaaaaaatctgccatagatttagctaagaatctaatgcttc |
6240470 |
T |
|
| Q |
101 |
atggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatgtccaactgagggacaact |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
6240471 |
atggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacattgtcaaactgagggacaact |
6240570 |
T |
|
| Q |
201 |
aga |
203 |
Q |
| |
|
||| |
|
|
| T |
6240571 |
aga |
6240573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6211436 - 6211637
Alignment:
| Q |
1 |
attatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |
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|
| T |
6211436 |
attatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgataaaaaaatctgc-atagatttagctaagaatctaatgcttc |
6211534 |
T |
|
| Q |
101 |
atggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatgtccaactgagggacaact |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
6211535 |
atggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacactgtccaactaagggacaact |
6211634 |
T |
|
| Q |
201 |
aga |
203 |
Q |
| |
|
||| |
|
|
| T |
6211635 |
aga |
6211637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 202 - 346
Target Start/End: Original strand, 6211659 - 6211803
Alignment:
| Q |
202 |
gaagatcggcatatttgtccaattaagaagcatgattatgcataggttgtcattgatctcaaagtatgcaagtaaatatttataactaagtgtaaacttt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6211659 |
gaagatcggcatatttgtccaattaagaagcatgattatgcataggttatcattgatctcaaagtatgcaagtaaatatttataactaagtgtaaacttt |
6211758 |
T |
|
| Q |
302 |
caagaacactaggagatatttggcctaaaaattgagagtgggatg |
346 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6211759 |
aaacaacactaggaggtatttggcctaaaaattgagagtgggatg |
6211803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 6240598 - 6240739
Alignment:
| Q |
205 |
gatcggcatatttgtccaattaagaagcatgattatgcataggttgtcattgatctcaaagtatgcaagtaaatatttataactaagtgtaaactttcaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |
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|
| T |
6240598 |
gatcggcatatttgtccaattaagaagcatgattatccataggttgtcattgatctcaaagtatgcaagtaaatatttataaccaagtttaaactttaaa |
6240697 |
T |
|
| Q |
305 |
gaacactaggagatatttggcctaaaaattgagagtgggatg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6240698 |
gaacactaggagatatttggcctaaaaattgagagtgggatg |
6240739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 17507499 - 17507306
Alignment:
| Q |
8 |
gttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgctt-catggaa |
106 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||| |||||| | | ||| ||||||||||| ||||||| |||| || |||| || |
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|
| T |
17507499 |
gttgaaggaactgaagatagaagtttgcaagcctattgcattcctcattaacaataaatt-tgctatagatttagcaaagaatcaagtgttttcatgaaa |
17507401 |
T |
|
| Q |
107 |
gaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatgtccaactgagggacaacta |
201 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| | |||||||||||||| |||||||| ||||| ||||||| ||| ||| |||| ||||||| |
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|
| T |
17507400 |
gaagcaaacacattaaggcaaaatttcactttattagagaacaagtgaacaaagaaatgtttaaggtcatacattgttcaatagaggaacaacta |
17507306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23428125 - 23427927
Alignment:
| Q |
1 |
attatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgcttc |
100 |
Q |
| |
|
|||||| ||| | |||| ||||||||||||||||||||| || ||| || ||| ||||| | ||| |||||||||||||| || | |||| | | |
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|
| T |
23428125 |
attatgtgttaagagaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaa--tatgctatagatttagctaaaaaccaagtgttgc |
23428028 |
T |
|
| Q |
101 |
atggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatgtccaactgagggacaact |
200 |
Q |
| |
|
||| ||||| |||||||| |||| || ||||||||| | |||||||||||||||| || ||||||||||| ||||||| ||||| | ||||| |||||| |
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|
| T |
23428027 |
atgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgaggaacaact |
23427928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 1833919 - 1833998
Alignment:
| Q |
76 |
gatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
155 |
Q |
| |
|
||||| |||||||||| |||| | |||| ||||| |||||||||||||| |||||||||||| | |||||||| ||||| |
|
|
| T |
1833919 |
gatttggctaagaatccagtgttgcatgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaa |
1833998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 19115992 - 19115907
Alignment:
| Q |
262 |
aaagtatgcaagtaaatatttataactaagtgtaaactttcaagaacactaggagata-tttggcctaaaaattgagagtgggatg |
346 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| ||| || ||||| |||||| || ||||||||||||||||||||||||||| |
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|
| T |
19115992 |
aaagtacgcaagtaaatatttattcctaagtgcaaaacttaaagaatcataggaggtaatttggcctaaaaattgagagtgggatg |
19115907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 19609982 - 19610083
Alignment:
| Q |
244 |
taggttgtcattgatctcaaagtatgcaagtaaatatttataactaagtgtaaactttcaagaacactaggagatatttggcctaaaaattgagagtggg |
343 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||||||||||||||||||| || || ||| ||| ||| |||| |||||||||||||||| |||| |
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|
| T |
19609982 |
taggttgtcatcaatttaaaagtatgcaagtaaatatttataactaagtgtaaaacttaaaaaac-ctaagaggtattaggcctaaaaattgagattggg |
19610080 |
T |
|
| Q |
344 |
atg |
346 |
Q |
| |
|
||| |
|
|
| T |
19610081 |
atg |
19610083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 15489950 - 15489886
Alignment:
| Q |
73 |
atagatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcactt |
137 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15489950 |
atagatttagctaagaattcagtgttgcatggaagaagcaaacacattgagacaatatttcactt |
15489886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 16943965 - 16943892
Alignment:
| Q |
82 |
gctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
155 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||| ||| ||| |||||||| | |||||| || ||||| |
|
|
| T |
16943965 |
gctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
16943892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 17014630 - 17014557
Alignment:
| Q |
82 |
gctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
155 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||| ||| ||| |||||||| | |||||| || ||||| |
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|
| T |
17014630 |
gctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
17014557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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