View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_13 (Length: 370)
Name: NF5347_low_13
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 17278751 - 17278413
Alignment:
| Q |
16 |
tgtggtagcgtatattgtgtttgtatccccagtgaatatagatgcttacctgcatcatacaaagatcttatgaaaatacctggaaaaaatccaaactatt |
115 |
Q |
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| T |
17278751 |
tgtggtagcgtatattgtgtttgtatccccaatgaatatagatgcttacctgcatcatacaaagatcttgtgaaaatacctggaaaaaatccaaactatt |
17278652 |
T |
|
| Q |
116 |
gtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgcgctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctctatatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17278651 |
gtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgcgctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctctatatc |
17278552 |
T |
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| Q |
216 |
agaggcagaagacttcttcttcaagcttgcctctaaatctacagtcacaaaagacttcttgaagatgtttgagatagcttaatattgataagtccataaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17278551 |
agaggcagaagacttcttcttcaagcttgcctctaaatctaccgtcacaaaagacttcttgaagatgtttgagatagcttaatattgataagtccataaa |
17278452 |
T |
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| Q |
316 |
atctacatccac-atatgatgcatcttctaccttaaata |
353 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
17278451 |
atctacatccacgatatgatgcatcttctaccttaaata |
17278413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 63 - 324
Target Start/End: Complemental strand, 17266607 - 17266349
Alignment:
| Q |
63 |
acctgcatcatacaaagatcttatgaaaatacctggaaaaaatccaaactattgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgc |
162 |
Q |
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|||||||||||| |||||||| |||| ||| |||| ||||| || |||| ||||||||||||||| ||||| || ||||||||| |||| ||||| ||| |
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| T |
17266607 |
acctgcatcatataaagatctagtgaagatatctgggaaaaaccctaacttttgtcagtctcatgtcgaatgtaaagagaagggaagtgggagcttctgc |
17266508 |
T |
|
| Q |
163 |
gctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctctatatcagaggcagaagacttcttcttcaagcttgcctctaaatctacagtca |
262 |
Q |
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|||||||||||||| |||||||| |||||||||| ||||||||||||| |||| |||| |||||| ||||||||| |||||||||||| |||||| |
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| T |
17266507 |
gctcgttatcctagccctaatgttgattatggtttgtgtgttgcctctttatctgagggagaaga---tttcttcaagattgcctctaaattaacagtcg |
17266411 |
T |
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| Q |
263 |
caaaagacttcttgaagatgtttgagatagcttaatattgataagtccataaaatctacatc |
324 |
Q |
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||||||||||||||| |||| |||||||||||| |||||| || |||||||||||||||||| |
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| T |
17266410 |
caaaagacttcttgacgatgcttgagatagcttgatattgttatgtccataaaatctacatc |
17266349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 12837656 - 12837595
Alignment:
| Q |
114 |
ttgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgcgctcgttatccta |
175 |
Q |
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|||||||||||||| |||||||| |||||||| |||| |||||||||||||||| ||||| |
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| T |
12837656 |
ttgtcagtctcatgatgaatgcaacaagaagggaagtgggagcttttgcgctcgttctccta |
12837595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 6803083 - 6802987
Alignment:
| Q |
115 |
tgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgcgctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctcta |
211 |
Q |
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||||||||||||| || |||| | |||| ||| |||| || ||||||||||||||||||| || | || |||| ||||| |||||| ||||||||| |
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| T |
6803083 |
tgtcagtctcatgctgattgcacgaagaaaggaagtgggagtttttgcgctcgttatcctaatcttgatatcgaatatggatggtgttttgcctcta |
6802987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 6785883 - 6785758
Alignment:
| Q |
157 |
ttttgcgctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctctatatcagaggcagaagacttcttcttcaagcttgcctctaaatcta |
256 |
Q |
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||||| ||||||||||||| ||||||| |||| ||||| |||| | ||||||||| || || ||| |||| | |||||||| || ||||||| ||| |
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| T |
6785883 |
ttttgtgctcgttatcctaatcctaatatcgaatatggatggtattttgcctctaactctgaagcacgagacgtattcttcaacatttcctctaactctg |
6785784 |
T |
|
| Q |
257 |
cagtcacaaaagacttcttgaagatg |
282 |
Q |
| |
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| | ||||||||| ||||||||||| |
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| T |
6785783 |
aacttacaaaagacctcttgaagatg |
6785758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 10621357 - 10621187
Alignment:
| Q |
63 |
acctgcatcatacaaagatcttatgaaaatacctggaaaaaatccaaactattgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgc |
162 |
Q |
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|||| ||||||| |||||| || |||| || | |||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||| || |
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| T |
10621357 |
accttcatcatataaagatgttgtgaagattaccggaaaaaatcataacttttgtcaatctcatgtggaatgcaaggagaagggacgtgggagcttctgt |
10621258 |
T |
|
| Q |
163 |
gctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctctatatcagaggcagaagacttctt |
233 |
Q |
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||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
10621257 |
gctcgttatcctagttctaaagtcgattatggtaggtgtgttgcctctatatctgaggaagaagacttctt |
10621187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 10621164 - 10621105
Alignment:
| Q |
295 |
taatattgataagtccataaaatctacatcca-catatgatgcatcttctaccttaaata |
353 |
Q |
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||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||| |
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| T |
10621164 |
taatattgatatgtccaaaaaatctacatccatgatatgatgcatcttctactttaaata |
10621105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 5951139 - 5951024
Alignment:
| Q |
115 |
tgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgcgctcgttatcctagtcctaatgtcgattatggttggtgtgttgcctctatat |
214 |
Q |
| |
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||||| |||||||| ||||||| | | |||||| |||| |||||||| |||| || ||||| || | |||| ||||||||||||||| |||||| || || |
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| T |
5951139 |
tgtcactctcatgttgaatgcatgaacaagggaagtgggagcttttgtgctcattctcctattcttgatgttgattatggttggtgttttgcctataaat |
5951040 |
T |
|
| Q |
215 |
cagaggcagaagactt |
230 |
Q |
| |
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| T |
5951039 |
ctgaggcagaagactt |
5951024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 25481820 - 25481910
Alignment:
| Q |
190 |
tatggttggtgtgttgcctctatatcagaggcagaagacttcttcttcaagcttgcctctaaatctacagtcacaaaagacttcttgaaga |
280 |
Q |
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| T |
25481820 |
tatggctggtgttttgcctctgagtctgaagcagaagacatattcttcaagattgcctctaaatctaaattctcaaaagacttcttgaaga |
25481910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 7941532 - 7941618
Alignment:
| Q |
115 |
tgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgcgctcgttatcctagtcctaatgtcgattatggttggtgt |
201 |
Q |
| |
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||||| ||||||| || |||| | |||| ||| ||||||||||||| ||||||||||||| |||| || |||| ||||| |||||| |
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| T |
7941532 |
tgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggtgt |
7941618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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