View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_14 (Length: 357)
Name: NF5347_low_14
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 41677073 - 41676778
Alignment:
| Q |
5 |
cacatctcgtcaaaaaggaatacacttgtcatgtttaaacgaaactttaataatagtgttgagctaagggtttgactaaaggtggccgacttattgtatg |
104 |
Q |
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| T |
41677073 |
cacatctcgtcaaaaaggaatacacttgtcatgtttaaacgaaactttaataatagtgttgagctaagggtttgactaaaggtggccgacttattgtatg |
41676974 |
T |
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| Q |
105 |
aaatatcttcttgacaaagtgattatcaaacagtgtgtttcgttgatgtgtgactatatgacgatgcaagtgtctgtggatgaaaaagcttccaatagta |
204 |
Q |
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| T |
41676973 |
aaatatcttcttgacaaagtgattatcaaacagtgtgtttcgttgatgtgtgagtatatgacgatgcaagtgtatgtggatgaaaaagcttccaataata |
41676874 |
T |
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| Q |
205 |
agagagcattctgtgtgggtgtgcatagaactcaacttgagggaaagata-ttggtatctctggttaaaggagtaaaacatttaatgaaaatgtgagaga |
303 |
Q |
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| T |
41676873 |
agagagcatcct------gtgtgcatagaactcaacttgagggaaagatagttggtgtctctggttaaaggagtaaaagatttaatgaaaatgtgagaga |
41676780 |
T |
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