View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_15 (Length: 345)
Name: NF5347_low_15
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 48476235 - 48475919
Alignment:
| Q |
13 |
catcagcttgtaaaatcatgagatgcatgcaagtggctcttttgtgtgttcaagagaactcagcagatagaccttccatgttagaagttgattcactaat |
112 |
Q |
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| T |
48476235 |
catcagcttgtaaaatcatgagatgcatgcaagtggctcttttgtgtgttcaagagaactcagcagatagaccttccatgttagaagttgattcactaat |
48476136 |
T |
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| Q |
113 |
caagaatgaaggtaggccaattggtactcccaacatgcctgccttttcaatgaacaaacatgaagatgataagggagatacatttaactctgggttcaat |
212 |
Q |
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| T |
48476135 |
caagaatgaaggtaggccaattggtactcccaacatgcctgccttttcaatgaacaaacatgaagatgataagggagatacatttaactctgggttcaat |
48476036 |
T |
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| Q |
213 |
ttatattcaatcaatgatgttacaatttctcaaatgttaccaagataatggtgtcgataagcatattttagctcttaatgtgatatctagtttaagtcgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476035 |
ttatattcaatcaatgatgttacaatttctcaaatgttaccaagataatggtgtcgataagcatattttagctcttaatgtgatatctagtttaagtcgt |
48475936 |
T |
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| Q |
313 |
gtaacacttcttagatc |
329 |
Q |
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||||||||||||||||| |
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| T |
48475935 |
gtaacacttcttagatc |
48475919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 48467272 - 48466963
Alignment:
| Q |
20 |
ttgtaaaatcatgagatgcatgcaagtggctcttttgtgtgttcaagagaactcagcagatagaccttccatgttagaagttgattcactaatcaagaat |
119 |
Q |
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| T |
48467272 |
ttgtaaaatcatgagatgcatgcaagtagctcttttgtgcgttcaagagaactcggaagatagaccatccatgttagaagttgattcgctgctcaagaat |
48467173 |
T |
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| Q |
120 |
gaaggtaggccaattggtactcccaacatgcctgccttttcaatgaacaaacatgaagatgataagggagatacatttaactctgggttcaatttatatt |
219 |
Q |
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| T |
48467172 |
gaaagtgcatatgtcggtactccaaacgtgcctgctttttcgatgaaaaaacttgaagaagataaggtggatacattaaaatctgggttcaaattctctt |
48467073 |
T |
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| Q |
220 |
caatcaatgatgttacaatttctcaaatgttaccaagataatggtgtcgataagcatattttagctcttaatgtgatatctagtttaagtcgtgtaacac |
319 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||| | |
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| T |
48467072 |
caatcaatgatgttacaatttctcaaatgctaccaagataatgttgtcgatatgcatattttagtagttaatgtgatatctagtttaggtcgtgtaagat |
48466973 |
T |
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| Q |
320 |
ttcttagatc |
329 |
Q |
| |
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|| ||||||| |
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| T |
48466972 |
tttttagatc |
48466963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 48483489 - 48483248
Alignment:
| Q |
20 |
ttgtaaaatcatgagatgcatgcaagtggctcttttgtgtgttcaagagaactcagcagatagaccttccatgttagaagttgattcactaatcaagaat |
119 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
48483489 |
ttgtaaaatcatgagatgcatgcaggtagctcttttgtgtgttcaagagaactcatcagacagaccttccatgttagaagttgattcattgctcaagaat |
48483390 |
T |
|
| Q |
120 |
gaaggtaggccaattggtactcccaacatgcctgccttttcaatgaacaaacatgaagatgataagggagatacatttaactctgggttcaatttatatt |
219 |
Q |
| |
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|||||| |||||||||| || |||| || ||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||| || | || |
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| T |
48483389 |
gaaggtgcatatgttggtactccaaatgtgcccgctttttcgatgaaaaaacatgaagatgataagggagatacatctaactccgggttcaaattttctt |
48483290 |
T |
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| Q |
220 |
caatcaatgatgttacaatttctcaaatgttaccaagataat |
261 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48483289 |
caatcaatgatgttacaatttctcaaatggtaccaagataat |
48483248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 48482431 - 48482385
Alignment:
| Q |
218 |
ttcaatcaatgatgttacaatttctcaaatgttaccaagataatggt |
264 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
48482431 |
ttcaatcaatgatgttacaatttctgaaatggtaccaagataatggt |
48482385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 38820595 - 38820684
Alignment:
| Q |
20 |
ttgtaaaatcatgagatgcatgcaagtggctcttttgtgtgttcaagagaactcagcagatagaccttccatgttagaagttgattcact |
109 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
38820595 |
ttgtaaaatcatgagatgcatgcaagtagctcttttgtgcgttcaagagaactcggaagatagaccttctatgttagaagttgattcact |
38820684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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