View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_16 (Length: 306)
Name: NF5347_low_16
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42468042 - 42467734
Alignment:
| Q |
1 |
caacatttactgatagaaaactctctataataataagatgccatgatttaaccatctttactgattcaaaagaaaaacaaaataatgagacaaaattact |
100 |
Q |
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| T |
42468042 |
caacatttactgatagaaaactcgctataagaataagatgccatgatttaaccaactttactgattcaaaagaaaaacaaaataatgagacaaaattact |
42467943 |
T |
|
| Q |
101 |
ttattatatgaaggttgtgcggaggaaattcgattcccaaacagttagaaaagtctataaatacttgtaattgtatcacttgtattcattcattcacttt |
200 |
Q |
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| T |
42467942 |
ttattatatgaaggttgtgtggaggaaattcgattcccaaacagttagaaaagtctataaatacttgtaattgtatcacttgtattcattaattcacttt |
42467843 |
T |
|
| Q |
201 |
tcataatcaatacaattcactcgtt---------------------acatcttgcacaaacaaatttgtatctctatcctttggcttatgcgtgtagatc |
279 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42467842 |
tcataatcaatacaattcactcgttctctcttagagtgcaagaaacacatcttgcacaaacaaatttgtatctctatcctttggtttatgcgtgtagatc |
42467743 |
T |
|
| Q |
280 |
aggacacag |
288 |
Q |
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||||||||| |
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| T |
42467742 |
aggacacag |
42467734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 49100111 - 49100222
Alignment:
| Q |
33 |
ataagatgccatgatttaaccatctttactgattcaaaagaaaaacaaaataatgagacaaaattactttattatatgaaggttgtgcggaggaaattcg |
132 |
Q |
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| T |
49100111 |
ataagatgccatgatttaaccaactttagtgattcaaaaggaaaacaaaataatgagactaaattgctttattatttgatggttgtggggagcaaaatca |
49100210 |
T |
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| Q |
133 |
attcccaaacag |
144 |
Q |
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| T |
49100211 |
attcccaaacag |
49100222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 1351820 - 1351743
Alignment:
| Q |
145 |
ttagaaaagtctataaatacttgtaattgtatcacttgtattcattcattcacttttcataatcaatacaattcactc |
222 |
Q |
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|||||||||||| |||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
1351820 |
ttagaaaagtctttaaatacttgtaattgtatcccatgtattcattcattcagttttcataatcaatataattcactc |
1351743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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